garem (garem1)


Basic Information

Item Value
gene id garem
gene name garem1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22317465 ~ 22326808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937013.2
AACGTCATGGAGTAGCTGGGAAGAGGAAATGGCCTCTGCAGCGCTCGGATCTCTATGGTCAGGGATACATGGCATTTCCTGTCAGTGTAAACACACCGTCTAGCTGACATGGCTTCAGTGCAAGACCATGACCGTGTTTAAGTAAACAAAGGAGCACGTAACGACGCTTTTCTCCATGAAAGAGCCACTCTGGGTGCTGATGAATGTGGCGGTGGGTTGACGACGCGGGTGGGTTAGCGAGCTAACATGGACCTCGGCTCTATGCTCTACAACAGTTTAAAAGATGTAACATGGAGCACGACAACTCTGCCTCTGGACCGACTGGTGAGCGCCTACAGACTGCCCCAGATTGTAAAACTGGACACCGGGGAATCGGTGGAAGGGCTAAGAGAAAACGACTACCTCTTGATTCATTCGTGTCGGCAGTGGACTACGATCACCGCCCATAGCCTGGAGGAGGGCCATTATGTCATTGGACCGAAAATCGAGATCCCAGTCCATTATGAGGGTCAATTCAAACTGCTGGAGCAGGACCGGGATATTAAGGAGCCGGTGCAGTACTTCAACAGCGTGGAGGAAGTGGCCAAAGCTTTTCCTGAACGAGTTTATGTCATGGAGGAAATAACATTCAATGTTAAGATGGCATCAGGAGAATGCAATGAGGACACAGAGGTGTACAATATCACCCTGAACACTGGCGACGAGTTAACGCTTATGGGCCAAGCTGAGATCCTGTATGCAAAAACGTCAAGAGAGAAATCACGCCTCAACACCATATTCAGGCGCATCGGCAAGCTGAACTCAATCGGTCGTCCAGGGCGGGGCAAGATGCCATGCCTGATCTGTATGAATCACCGCACTAACGAGAGTGTGAGCCTGCCATTTCAGTGCCGTGGCCGCTTCAGCACATGCTCGCCACTGGAGCTGCAGATGCAGGAGGGTGAGCACAGCATCCGTGCCATAGTGGAGAAGACACGGCTGCCCGTCAATGTGACTGTGCCTGCGTGTCCACCGCGCAACCCGCATGACCTGCACCCGATCCGAGAGGGTCACCGCTACAAGCTCGTCAATGTGCGTACCAAGACGGTGGTGGTGTGCTGTGTACTCCGCCCCAACGCTGTGCTGCCTGTACACTTTCCCTTGCATGTTGCCACGGCAATGCCTCGCTTGCTGGTACCTGAAGGCCTGCTGCATGGAGAGGCATGGCTGGAAAGCGTAGTTCATCGCTGGTTCGCATACTGCCAGGAACAGTTTGATATCGACAACTACTCGAGAGCAGTGCGTGATGTGAGGGCCGACTGGCCCGAGGACTCCAAGAGTCCCAAGAAAGGCACCAGTGGAACAGGATGCGCAGTCGGGACTGGAAACGGCGGTGGAGTTGGTACCAACGGCTGCCCTGCCCACCTGCCCAGCTCACTTAGCTCAGCCCGGGACGAGCTCACACAGTCATTCCACCGACTATCCGTCTGTGTCTATGGGAACAATCTGCATGGCAACAGCGAGGTGAACCTGCAGGGTTGTGTTAGCCTCTACGGGGAGCTTGTGCCTCCAGAAGCACCAGATGCGGATTATCCATTTCCAGAGCTGCTAGACAGTTCATCTGGTCCTTGCAAAGCGGATCTGCCATACGAGGAACTGTGGCTggaccacacacagacacacagtcctGTACACGAGCACAACGAGGCTGTCCGAGGAAGCGTTAGCATCTCCAGCTGCCTGTCTGGCCTGCCATACCCCAGTGTGGGTTCTACAAGTGCTGCCTTCCTCAGTGCTGATATCAATCTACCTCCACCCCCTGTGCCTCCAAAATCTGAAGCTGTGAAGGAGGAGTGTCGGTTGTTAAACGCTCCTCCAATTCCTCCGAGGAGTTCCAAACAGACAGCCCTGAGCTCCGGCAGCGTCCCAGTGCCATATCCACCCACAAAGCCACGGCAGCCAGATACTCGTTCCCCAAGCCCAACGCTGTCCTACTACTCCTCTGGTCTGCACAACATaggaggagagagtgagTCCTCAAAAGAGATGGAGGAGCAGAACCACGCATGTTACCCATGCAACTGGATTCGAACAGATACCAACAAAAGCACCAAGCCTCCCCCCTGTCTCAGTCCCTCCACTGACACTGCGCTCTCCCGTCTCTCCTGGCCAAATGACTTCTGTGGGCCTGATTTCCACAAAACTGAGGACTTCTCATCAGTACATTGCCGTAGTTACTCCAGTTACCCTAGGAAAAGGACCCCTGGCACCCCTAAGACTTGTTCCTCTGGCCTCTTTGACTTTGACAGAGGAGGGACAAGCACTGCAGCCACAAAGGCCCAGCAGCCGGCCCAGTTTTGTACTAAATCGACTAGTTATACCCTGGAAATGTACAGAGACAAACCTATTGAGGAATGTGACACTAAACAAAGCAGATCCTGCCCTATCTTGCCACCAAGAACCCCAAAACCCAGTGATGCAAAGAAAGATAAGGAATGTGCATCAGCAAATGTCGCAGGCGTTGACACTACACAACAACAGGTGGACAGAGTAAACCAGGCAACTGCACTGTCCTGTCCTTCCACTACAGGGCCACAATGGCAGCCACCAAACAACCTCTCGGGCCTTTCCATTGAAGAGGTGTCCAAGTCACTACGTTTCATTGGTATGTCGGAGGACgtggttggtttgtttgttcgAGAGAAAATCGATGGCAATTTGCTCTTGCAGCTAACAGAAGAGATTCTGTCAGAGGACTTTAAGTTAAGCAAACTACAAGTGAAAAAACTCATGCAGTTTATTGGTGGCTGGAGGCCCAAAATGTAAGCTCGaacaaaaatatggcaaaacATTTAATGCGCTGCATAACACTACAGCCTTCAGTATTGCGTTCGACTGTTTTGTATCTATATGCTATGCACAGTCTGAAGCCTTGTAATGATTTTACTGGTTTGTagaatatatatgtgtatatgataTGAATATAGGGTGCTTTGTGTATTAACTTCCCATGTCTTGACCTGTACTTTTGTCTCTATGTAATCTCTTTCTGTGACCTTATGGTACCTGCACAACACACTTAATATTTTGCTCAAACCCAAAGCCTTTgagaaatatgaatatattttgatCAAACCCAA

Function

symbol description
garem1 Enables proline-rich region binding activity. Involved in several processes, including cellular response to epidermal growth factor stimulus; epidermal growth factor receptor signaling pathway; and positive regulation of ERK1 and ERK2 cascade.

NR:

description
PREDICTED: GRB2-associated and regulator of MAPK protein isoform X1

GO:

id name namespace
GO:0071364 cellular response to epidermal growth factor stimulus biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0070064 proline-rich region binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937013.2 True 3119 mRNA 0.51 6 22317465 22326808

Neighbor

gene id symbol gene type direction distance location
chpf2 chpf2,LOC107724403,LOC107684493 coding downstream 65081 22245230 ~ 22252384 (-)
nsun6 nsun6 coding downstream 383872 21917213 ~ 21933593 (-)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855 coding downstream 532090 21777876 ~ 21785375 (-)
tyms tyms coding downstream 559738 21748835 ~ 21757727 (-)
adcyap1a LOC108268182 coding downstream 581707 21730195 ~ 21735758 (-)
dph2 dph2,LOC105920302 coding upstream 11945 22338753 ~ 22345651 (-)
mcur1 LOC108268156,LOC108440645 coding upstream 19127 22345935 ~ 22354577 (-)
rgs9bp LOC108268154,LOC103039154 coding upstream 31387 22358195 ~ 22361153 (-)
scrib scrib coding upstream 50879 22377687 ~ 22468044 (-)
puf60b puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 coding upstream 143411 22470219 ~ 22482144 (-)
G68923 NA non-coding downstream 128702 22188183 ~ 22188763 (-)
G68907 NA non-coding downstream 143491 22170080 ~ 22173974 (-)
G68758 NA non-coding downstream 371228 21945612 ~ 21946237 (-)
G68752 NA non-coding downstream 470737 21846385 ~ 21846728 (-)
LOC117597088 NA non-coding downstream 473884 21840481 ~ 21843581 (-)
G69124 NA non-coding upstream 52487 22379295 ~ 22379533 (-)
G69128 NA non-coding upstream 82795 22409603 ~ 22452697 (-)
G69131 NA non-coding upstream 126414 22453222 ~ 22459488 (-)
G69139 NA non-coding upstream 178982 22505790 ~ 22512310 (-)
G69136 march6,LOC107664076,LOC107732575 non-coding upstream 188896 22515704 ~ 22519266 (-)
G68760 NA other downstream 382296 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 946455 21354619 ~ 21371010 (-)
G68462 NA other downstream 988215 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1003568 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 1491945 20778538 ~ 20825520 (-)
LOC113540019 LOC108268143 other upstream 302807 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 965240 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1004208 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1153157 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 1166571 23493379 ~ 23493919 (-)

Expression


Co-expression Network