LOC113540546


Basic Information

Item Value
gene id LOC113540546
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26981189 ~ 26982209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937110.2
GCAGATACCCCTCCTCACACTTCACCACAATCCTAACAATGATCTTGATGCTGAATTTGATTTTCCTGCTCTTTGTGAGCACAAACCAGGCAGAGGACATTTTGGAGCCATGCGTAAGCAGCTTTGTGTCAGAACTGAGGAAGATCAAAACCTTAGAGGCTGAAATTCAAGAGCTCAGGAAACAGATCACAGAACAACCCAAAGTGGCATTCTGGGCCATACCTTCCAGTGATACTAATGCAATTGGACCATTTCAGGAATATCAGATTCTGGtgtacaaaagtgctttgaccAACATTGGTAATGCCTATGACACAACAACAGGTATCTTCACAGCACCGGTGAGAGGAGTATATTACTTCAACATTGTGGTTTTCAATGCAAACTCCCTTGCAACTGGTGTGCATATAATGAAGAACGGAGTGCGTGTGGCAGCAATAACAGATAATGTACCGGGACAGGACAGTGAGGACACAGCGAGTAACTCAGTCACTCTGCTGCTTGAGAAAGGAGACCGGATTTACAACGAGCTCCTGGTGAACCGGAAAATTTACACTGATACAGGAAACCGTAATTCATTCAGTGGCCATCTTCTGTACGCAATGCCCAAAACTCACTAAACACTGATGCACACATTGATCTGGAGACATTAGTAATGTTGAGATGATATCAGTGAAGTGGCAGAATGCTGCCGCTCATTTTATCCAtagtataaaattattaaaaaaagattataagttcataataattgaaaaatcatcataacagcaaataaaaaaaacatgcatacaAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937110.2 True 793 mRNA 0.41 3 26981189 26982209

Neighbor

gene id symbol gene type direction distance location
prkci prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 coding downstream 47670 26917159 ~ 26933519 (-)
skila LOC108267442 coding downstream 67609 26903908 ~ 26913580 (-)
nadkb nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 coding downstream 91853 26881468 ~ 26889336 (-)
samd7 LOC108267443 coding downstream 136171 26835646 ~ 26845018 (-)
LOC117597119 NA coding downstream 145301 26835025 ~ 26835888 (-)
tmem125b LOC108267439 coding upstream 123285 27105494 ~ 27108411 (-)
cfap57 cfap57 coding upstream 126603 27108812 ~ 27143851 (-)
LOC113540028 NA coding upstream 171290 27153499 ~ 27158015 (-)
LOC113540236 LOC108267484 coding upstream 255735 27237944 ~ 27261901 (-)
LOC113539949 LOC108267483 coding upstream 304952 27287161 ~ 27310976 (-)
G71765 NA non-coding downstream 45992 26934990 ~ 26935197 (-)
G71764 NA non-coding downstream 85625 26894681 ~ 26895564 (-)
G71734 NA non-coding downstream 121734 26847346 ~ 26859455 (-)
G71732 LOC108267445,LOC107591334,LOC107684401 non-coding downstream 124517 26853267 ~ 26856672 (-)
G71707 NA non-coding downstream 284092 26696893 ~ 26697097 (-)
G71815 NA non-coding upstream 49108 27031317 ~ 27036462 (-)
G71854 NA non-coding upstream 160897 27143106 ~ 27151314 (-)
G71892 NA non-coding upstream 191843 27174052 ~ 27174536 (-)
G71896 NA non-coding upstream 197725 27179934 ~ 27180140 (-)
G71903 NA non-coding upstream 209253 27191462 ~ 27191809 (-)
G71596 NA other downstream 430159 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 604781 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2395141 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2676263 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3449173 23531238 ~ 23532016 (-)
G71832 NA other upstream 114393 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 221574 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 413148 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 413942 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 433058 27415267 ~ 27432678 (-)

Expression


Co-expression Network