chpf2 (chpf2,LOC107724403,LOC107684493)


Basic Information

Item Value
gene id chpf2
gene name chpf2,LOC107724403,LOC107684493
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22245230 ~ 22252384 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937223.2
ttcctctctaagTCGCGTAACGGTGTCTCTGCTTTTGGAGTATTTACGCCAGTCCACTTTTactgactgttttattttgtttattataatttttttttagtttaacgTTGCAGCTCAGTATTTTTACGCTTGAagaagagctgctgctgtcgacaaagagagacaaaacGGACctatggtgtttttttatttatgaaattaaaagaaGATGGTTGACTACTGggtattgtattaaaaaaacaaaaacaaagagtaGATAGCTGGAATAGCTTTAGTAATGTAGATTAAAAACATCAACAGTGCTTGTAGATGCTATTTCAGTTTAATAAGTCACTGAGTGAGTGGTGAGACTCGACGccagggttgttttttttgttgctcaTTTAAGTGGCAAGTAGCGACGTGTATTTTCTACTTCTCAGTTTGTGGGTGGATCAAATCAGGAAGAACAGAGCAACATTGTTACTGAGGAATCCAGACAGTTTTTGGGGTTGGTTACAGgtttaaaatgagattttaGCTATATACTCAACTCTTAATAATAttctattttactttatttcccCTATAAGTTATTAATGATCTCTACTGAAGAGAAAATGCACACTGAGCCTATAACATGTCAAGCTGTAGTCGACATCCTGCTGAGGGGTTCACTACATTAACTGACCTCAGTTAAGAATCAAAGATGTCCCCTTCAGAGAAAGCCTAGTTTCCAGCTCACCTTATACACAAGGCATTTCTCAGTACTCTGATTTGACTGACTTGGAGAGTCAAAGCTGTTCCTGCCATCCAAACTACTCCTGAGGACTCAGAGGACACTGATCCATCGTACAGCTTCACTTTCAGTCATGCGCCTGTCCTCTTTCCTCGCCGTCTTCCGGCCGGCCCTGCCTCTCATCCTGGGCTTGTCTTTGGGCTGCAGTCTCAGCCTGCTTATGGTGTCCTGGACGCAGGGGGACACGGACGAGGTCTGCAGCGATCAGCTGCGTCTTGGACTTCTTCAGGGAGCTCATGTCAGAGAACCCCAGAAAGCGGACGCAGGGGACAGGAACGAGGATTTCCAACCTCGCATTGTACCCTATCATAAGGACCCCAGCAAGCCGCATAAGAAAGTGCTCAGGACCCGTTATATCCACACGGAACTTGGCATTCGTGAGCGCCTCCTGGTGGGCATCCTGACCTCGCGTGCCACCCTTAACACGCTGGCCGTGGCGGTGAACCGCACCGTGGCGCATCGCTTCCACCGCACCTTTTTCTTCACCGGCCTCCGCAGTGCGAAGCTGCCCCACGGCATGGCTGTGGTCGCTCATGGAGACGACCGGCCCGTCTGGCTCATGTATGAAACCATCCGTCACCTGCATCAGCACCATGGCAACGAATATGACTGGTTCTATCTGGCCCAGGACGACACATACACCCAGGCGGAGCGCATCATGAACCTAGTGGGGCATTTGAGTGCAGGGCAGGATCTCTACATGGGCCGCGCAGAAGAGTTTATTGGCGGTGAAGAGCGGGCTCGATACTGCCACGGCGGGTATGGCTACCTGTTATCACGGAGCCTGCTGGCCCGGCTACAGCCGCACCTCGACGCTTGCCGCAACGACATCCTCAGCGTCAGGCCTGATGAGTGGCTGGGCCGCTGCATTATTGACTACCTGGGACTGAGCTGCATGGAAAAGCACCAGGAGATGAGCTTCTATTACTTTGAGCTGCAGAAAAACGCAGACCCTGAGCGCGAGGACAGCATCCAGTTCAAGAACGCCTTCACCGTGCACCCAGTCTCAGAGCCGGCACTCATGTATCGGTTACATAAACGCTACAGCCAGATAGAACTGGACTGGACCTATGCTCAAATACAGCAGCTCCAGGTTCAAATCAACAATCTGAGTGAGCTCACTCCAGAAGGCAAAGCAGGAGCCACCTGGCCCATTGGGGTCAACCCGCCTTTCCGTCCCAAGACGCGATTTGAAGTAATCAACTGGGAGTATTTCACAGAAGAGCATATCTACTCCTGTGCAGACAGCTCCCCGAAGTGTGAGCTCCGTGGAGCAGACCGTGCAGACGTTAACTCCATTTTGGAGACTGCTGTGGAGCGTTTAAACGAGCGCTATCAACCACAGCTGCGTTTCCGGAAGCAGCGTTTGTTGAATGGCTACCGCCGCTTTGACCCCACACGGGGTATGGAGTATATACTGGACCTGGCCCTACAGGCCTTCACACAGAAGGGCCACAGTCAGGTGATCGCCAAGCGGGTGGGCTTGCTAAGGCCTCTCAGTGCCATAGAGATCATTCCAATGCCCTATGTGACTGAAGCAACGAGAGTGCAGGTCATCCTTCCAGTGACTGCACGGGATCAGGACTTTGTGGGCAACTTTTTGGACACGTATGTGATGAACACTTTGGACACACGAGACAATGCTCTACTGACCTTCCTTTTTGTGTATGACCCCTTTGATGCACAGAGGGTCAGCCAGACAGATGTCTTCGCCAGCGTGAAATCTATGATCAGCGAGGTGGAGAAGCGCTACAGCGATGTGAAGATCCCATGGATCAGCGTCAAAACAGAGGTTCCCTCACAGGTCAAGCTGATGGACATCATCTCCAAGAAGCATCCAGTGGACACGCTTTTCTTCCTAGCCAACGTCTGGACCGAGGTCACTGGTGACTTCCTGAACCGTTGCCGCATGAATGCCATCAGTAACTGGCAGGTCTTCTTCCCTATTCATTTCCAAGAGTACAGCCCAGCTCTGGTGTACCGAGACCAGCAACCTTCTGCAGCTTCGTCGTTTTCTTCGGAGGCACTCCGAGACGGCCGCTTTGACCGGCACGCATTTGAGGAGGCGTGTTTTTACAATGCAGATTACATGGCCACCCGTACCAAGATGGCCACTGACATCATGGACAATGATGAGTTGCTGGAGAGCATGGACGTTTACGAGATTTTTGTGCGCTACTCAAGCTTACATGTTTTCCGGGCCGTGGAGCCAGCTTTGATCCAGAAATATGTACGGCGAGCCTGTAACCCCCGGTTTAGTGAAGACATCTACCATCGCTGTGTGCTGAGCAATTTAGAGGGCCTGGCCTCACGATCACACTTAGCTATGGCTCTGTTTGAACAAGAGCAGGCAAACAGCACCTAGGACATGTGGCTGGATAGGGAGGTAGACCTGCCTATGAGGAGTCTCATTCTGCCAATGTAACTGGCCTTACTGGATATTAGTCTGCAAACTGTGAAAACCAAACTTTAGTTCCATGATGAACTTGTTGAACGTAAGTCTGAGAATATAGAACGTGAGACTGTTTCAGTAAATCAGTCAGTAAAGCAAATCCACTTAAAGCAACAACTGATTAAAGATATCTTATTCAGTAA

Function

symbol description
chpf2 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranial cartilage; nervous system; notochord; optic cup; and tail bud. Orthologous to human CHPF2 (chondroitin polymerizing factor 2).

NR:

description
chondroitin sulfate glucuronyltransferase-like

GO:

id name namespace
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03419 CHPF2; chondroitin polymerizing factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937223.2 True 3373 mRNA 0.50 4 22245230 22252384

Neighbor

gene id symbol gene type direction distance location
nsun6 nsun6 coding downstream 311637 21917213 ~ 21933593 (-)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855 coding downstream 459855 21777876 ~ 21785375 (-)
tyms tyms coding downstream 487503 21748835 ~ 21757727 (-)
adcyap1a LOC108268182 coding downstream 509472 21730195 ~ 21735758 (-)
smchd1 smchd1 coding downstream 621598 21582222 ~ 21623632 (-)
garem garem1 coding upstream 65081 22317465 ~ 22326808 (-)
dph2 dph2,LOC105920302 coding upstream 86369 22338753 ~ 22345651 (-)
mcur1 LOC108268156,LOC108440645 coding upstream 93551 22345935 ~ 22354577 (-)
rgs9bp LOC108268154,LOC103039154 coding upstream 105811 22358195 ~ 22361153 (-)
scrib scrib coding upstream 125303 22377687 ~ 22468044 (-)
G68923 NA non-coding downstream 56467 22188183 ~ 22188763 (-)
G68907 NA non-coding downstream 71256 22170080 ~ 22173974 (-)
G68758 NA non-coding downstream 298993 21945612 ~ 21946237 (-)
G68752 NA non-coding downstream 398502 21846385 ~ 21846728 (-)
LOC117597088 NA non-coding downstream 401649 21840481 ~ 21843581 (-)
G69124 NA non-coding upstream 126911 22379295 ~ 22379533 (-)
G69128 NA non-coding upstream 157219 22409603 ~ 22452697 (-)
G69131 NA non-coding upstream 200838 22453222 ~ 22459488 (-)
G69139 NA non-coding upstream 253406 22505790 ~ 22512310 (-)
G69136 march6,LOC107664076,LOC107732575 non-coding upstream 263320 22515704 ~ 22519266 (-)
G68760 NA other downstream 310061 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 874220 21354619 ~ 21371010 (-)
G68462 NA other downstream 915980 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 931333 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 1419710 20778538 ~ 20825520 (-)
LOC113540019 LOC108268143 other upstream 377231 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1039664 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1078632 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1227581 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 1240995 23493379 ~ 23493919 (-)

Expression


Co-expression Network