abcf2a (abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809,LOC107556971)


Basic Information

Item Value
gene id abcf2a
gene name abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809,LOC107556971
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23935330 ~ 23942837 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937236.2
TCTGCGAATCCTAAAATCCCATTGGCTGGCGAGCCGGTCTTGAGCACGCGCGTTGTTACGACGCCGTGTATCGAAAAGCCATGAGGCTGCTGGTTTCCTGTTAGTGAACCGGGACCGCTCAAGTGGGAGAAGTAAAGTTTGCTGTGTCCCCAGGACCTTTTATTCCTGTTCCCCGGTCACAATGCCGTCCGATTTGGCCAAGAAGAAGGCAGCGAAGAAGAAGGAGGCAGCCAAGGCCCGTCAGCGGCCCAAAAAAGCTGAAGAAGTGAACGGCGAGGGGGAGAAACCAGAGAGCCAAGAAAACGGTGTGTCTGAGGTCAATGGAGTAGCCAGTCTTACTaaggagctggatgagtttgAGCTGAAGAAGACAGAGGCACGTGCTGTTACAGGGGTGCTGGCATCTCATCCAAACAGCACAGATGTGCACATCAGCAGTCTCTCGCTAACTTTCCACGGGCAGGAACTGCTCAGCGATACCTGTCTGGAGCTCAACTCGGGTCGCCGCTACGGCCTCATCGGACTCAATGGAACAGGTAAATCTATGCTGCTGTCGGCCATCAGTCACAGAGAGGTGCCCATTCCAGAGCACATTGACATTTACCACTTGACACGCGAAATGGCTCCTAGTGAGAAGACggcactgcagtgtgtgatggaggtggACGAGGAGAGGATCAAGCTggagaaagaggcagagaggcTCGCTCACGAAGACTCTGAATGTGAGAAGCTGATGGAGCTGTATGAACGACTGGAGGAGCTGGATGCAGACAAGGCAGAGATGCGAGCGTCCCGTATCCTTCACGGCCTCGGCTTCACCACTGCAATGCAGCAGAAAAAGCTCAAAGACTTCAGTGGTGGCTGGAGGATGCGTGTTGCTCTTGCCAGAGCGCTGTTCCTCAAACCCTTCATGCTGCTCCTGGACGAGCCCACCAACCACTTGGACCTGGATGCATGCGTGTGGCTGGAGGAAGAATTAAAGGAATTCAAACGAATTCTGGTTTTGATATCCCATTCTCAAGACTTCCTCAACGGCGTGTGCACCAACATCATCCACCTGCACCAGCGCAAGCTGAAATACTACACGGGTAATTATGACCAGTATGTGAAAACTAGAGAAGAATTGGAGGAGAACCAGATGAAACGCTTTAACTGGGAGCAGGACCAGATTGCACATATGAAGAATTATATAGCACGGTTCGGTCATGGCTCGGCCAAGCTGGCCCGGCAGGCACAGAGCAAAGAGAAAACGCTGCAGAAAATGGTCGCCTCAGGGCTGACTGAACGTGTAGTGAATGACAAGACCCTGTCATTTTACTTTCCTTCCTGTGGGAAGATCCCTCCTCCAGTCATCATGGTTCAAAACGTCAGCTTCAGATATTCGGATAATACGcctATCATTTATAAAAATCTGGAGTTTGGAATTGACTTGGATACCAGAGTGGCCCTTGTGGGGCCCAACGGGGCTGGCAAATCCACACTACTGAAGCTGCTCACTGGGGAgCTACTCCCCACTGACGGCATGATCAGAAAGCACTCCCATGTCAAGATCGGCAGATATCACCAGCATCTGACAGAGCAGCTGGATCTGGACTTGTCCCCTCTGGAGTACATGATGAAGTGCTACCCAGAGatcaaagagaaagaggagatgAGGAAGATCATCGGACGCTACGGACTCACTGGCAAACAGCAGGTGAGTCCCATCAGGAATCTGTCAGACGGTCAGAAGTGCCGTGTGTGCTTTGCCTGGTTGGCCTGGCAGAACCCCCACATGCTCTTCCTGGACGAGCCTACCAATCACCTGGACATCGAGACCATCGACGCACTTGCTGAGGCCATTAATGACTTTGAAGGTGGAATGATGCTGGTCAGCCACGACTTCAGACTCATTCAGCAGGTAGCTCAGGAGATCTGGGTTTGTGAAAAACAGACCATCACCAAATGGAGTCAGGACATCTTGGCCTACAAAGAACATCTGAAAGCCAAAATCGATAAACATATATAAGGCATGCATTGCCTCGTCCATCCAAGGCAGACAACATCTCCACTGTTGCTCCCCTTGGCAAAGCGTGCATGCGGCTGATGTACCATCTGTTGCAAAGACGTCTacagttttgcatttttgttgtcttattcttatctaaattaaataaatcaaggcAGGTGTGCACTTAAGCATATTTTCAGGACATTTcacaggtttgtttttgttttttaaataaaccgcATCAGCAGGACAAATGCTGATGCATCACTGCTATACATATACATGAGCTCTTAAAGAGCTTTTATTTTTCAAGTATTTAAAACTGTATCTGCAATAATGGACTTGTCTGAGCATAACTGAATAAAAGTACCTTTGTCAGTACTTACAGAT
>XM_034304135.1
GGACACAATGCGGTGAGCAGAGCTGAAATCACTCAGCTTTGTCTCGGGGTAATTTAGATTAACTGCCGTGGCCTGTTTGTGGTTTCTTAAGTTgatattaacaaaaataatcgcCTATTCGATTAAAACGTTTGCTGTGTCCCCAGGACCTTTTATTCCTGTTCCCCGGTCACAATGCCGTCCGATTTGGCCAAGAAGAAGGCAGCGAAGAAGAAGGAGGCAGCCAAGGCCCGTCAGCGGCCCAAAAAAGCTGAAGAAGTGAACGGCGAGGGGGAGAAACCAGAGAGCCAAGAAAACGGTGTGTCTGAGGTCAATGGAGTAGCCAGTCTTACTaaggagctggatgagtttgAGCTGAAGAAGACAGAGGCACGTGCTGTTACAGGGGTGCTGGCATCTCATCCAAACAGCACAGATGTGCACATCAGCAGTCTCTCGCTAACTTTCCACGGGCAGGAACTGCTCAGCGATACCTGTCTGGAGCTCAACTCGGGTCGCCGCTACGGCCTCATCGGACTCAATGGAACAGGTAAATCTATGCTGCTGTCGGCCATCAGTCACAGAGAGGTGCCCATTCCAGAGCACATTGACATTTACCACTTGACACGCGAAATGGCTCCTAGTGAGAAGACggcactgcagtgtgtgatggaggtggACGAGGAGAGGATCAAGCTggagaaagaggcagagaggcTCGCTCACGAAGACTCTGAATGTGAGAAGCTGATGGAGCTGTATGAACGACTGGAGGAGCTGGATGCAGACAAGGCAGAGATGCGAGCGTCCCGTATCCTTCACGGCCTCGGCTTCACCACTGCAATGCAGCAGAAAAAGCTCAAAGACTTCAGTGGTGGCTGGAGGATGCGTGTTGCTCTTGCCAGAGCGCTGTTCCTCAAACCCTTCATGCTGCTCCTGGACGAGCCCACCAACCACTTGGACCTGGATGCATGCGTGTGGCTGGAGGAAGAATTAAAGGAATTCAAACGAATTCTGGTTTTGATATCCCATTCTCAAGACTTCCTCAACGGCGTGTGCACCAACATCATCCACCTGCACCAGCGCAAGCTGAAATACTACACGGGTAATTATGACCAGTATGTGAAAACTAGAGAAGAATTGGAGGAGAACCAGATGAAACGCTTTAACTGGGAGCAGGACCAGATTGCACATATGAAGAATTATATAGCACGGTTCGGTCATGGCTCGGCCAAGCTGGCCCGGCAGGCACAGAGCAAAGAGAAAACGCTGCAGAAAATGGTCGCCTCAGGGCTGACTGAACGTGTAGTGAATGACAAGACCCTGTCATTTTACTTTCCTTCCTGTGGGAAGATCCCTCCTCCAGTCATCATGGTTCAAAACGTCAGCTTCAGATATTCGGATAATACGcctATCATTTATAAAAATCTGGAGTTTGGAATTGACTTGGATACCAGAGTGGCCCTTGTGGGGCCCAACGGGGCTGGCAAATCCACACTACTGAAGCTGCTCACTGGGGAgCTACTCCCCACTGACGGCATGATCAGAAAGCACTCCCATGTCAAGATCGGCAGATATCACCAGCATCTGACAGAGCAGCTGGATCTGGACTTGTCCCCTCTGGAGTACATGATGAAGTGCTACCCAGAGatcaaagagaaagaggagatgAGGAAGATCATCGGACGCTACGGACTCACTGGCAAACAGCAGGTGAGTCCCATCAGGAATCTGTCAGACGGTCAGAAGTGCCGTGTGTGCTTTGCCTGGTTGGCCTGGCAGAACCCCCACATGCTCTTCCTGGACGAGCCTACCAATCACCTGGACATCGAGACCATCGACGCACTTGCTGAGGCCATTAATGACTTTGAAGGTGGAATGATGCTGGTCAGCCACGACTTCAGACTCATTCAGCAGGTAGCTCAGGAGATCTGGGTTTGTGAAAAACAGACCATCACCAAATGGAGTCAGGACATCTTGGCCTACAAAGAACATCTGAAAGCCAAAATCGATAAACATATATAAGGCATGCATTGCCTCGTCCATCCAAGGCAGACAACATCTCCACTGTTGCTCCCCTTGGCAAAGCGTGCATGCGGCTGATGTACCATCTGTTGCAAAGACGTCTacagttttgcatttttgttgtcttattcttatctaaattaaataaatcaaggcAGGTGTGCACTTAAGCATATTTTCAGGACATTTcacaggtttgtttttgttttttaaataaaccgcATCAGCAGGACAAATGCTGATGCATCACTGCTATACATATACATGAGCTCTTAAAGAGCTTTTATTTTTCAAGTATTTAAAACTGTATCTGCAATAATGGACTTGTCTGAGCATAACTGAATAAAAGTACCTTTGTCAGTACTTACAGAT

Function

symbol description
abcf2a Predicted to enable ATP binding activity. Is expressed in neuromast. Orthologous to human ABCF2 (ATP binding cassette subfamily F member 2).
abcf2 Predicted to enable ATP binding activity. Located in membrane.

NR:

description
ATP-binding cassette sub-family F member 2-like isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06185 ABCF2; ATP-binding cassette, subfamily F, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937236.2 True 2383 mRNA 0.49 15 23935330 23942837
XM_034304135.1 False 2376 mRNA 0.49 15 23935330 23942381

Neighbor

gene id symbol gene type direction distance location
faim2a LOC108413298 coding downstream 229 23925080 ~ 23935101 (-)
ttc19 ttc19 coding downstream 16024 23907159 ~ 23919306 (-)
slc4a2a slc4a2,LOC108413474 coding downstream 35423 23859872 ~ 23899907 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding downstream 76944 23845044 ~ 23858386 (-)
asap1a LOC108267580,LOC108437251 coding downstream 92026 23784098 ~ 23843304 (-)
smarcd3a smarcd3,smarcd3a,LOC103039772,LOC107599876,LOC107718026 coding upstream 1016 23943853 ~ 23973123 (-)
tmub1 tmub1,LOC105023792,LOC106568619 coding upstream 31910 23974747 ~ 23982005 (-)
fastk fastk,LOC107599878,LOC107701011,LOC107557009,LOC107657442,LOC107718024 coding upstream 44967 23987804 ~ 24001864 (-)
LOC113540038 NA coding upstream 64851 24007688 ~ 24009864 (-)
puf60a puf60a,LOC108267407,LOC108413493,LOC107657443,LOC107718021,LOC107599879 coding upstream 85464 24028301 ~ 24041383 (-)
LOC117597086 NA non-coding downstream 3095 23931333 ~ 23932235 (-)
G69916 NA non-coding downstream 12792 23922106 ~ 23922538 (-)
G69691 NA non-coding downstream 283464 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 340786 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 481109 23453233 ~ 23454221 (-)
G70025 NA non-coding upstream 195456 24138293 ~ 24138492 (-)
G70026 NA non-coding upstream 202741 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 203053 24145890 ~ 24146241 (-)
G70044 NA non-coding upstream 236194 24179031 ~ 24179864 (-)
G70540 NA non-coding upstream 929793 24872630 ~ 24872833 (-)
LOC117597117 NA other downstream 403314 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 417660 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 418971 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 420395 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 421291 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 361537 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 622904 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2429084 26371921 ~ 26376408 (-)
G71596 NA other upstream 2529243 26472080 ~ 26551030 (-)
G71832 NA other upstream 3153765 27096602 ~ 27100858 (-)

Expression


Co-expression Network