clul1 (clul1)


Basic Information

Item Value
gene id clul1
gene name clul1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23041108 ~ 23050113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937238.2
CTTGAAACACATAGATTCACATCAAGCTACCAGAAGTTTCTGACTGAGTGTGGAGTGACTGTAAGGAGAAGATGAGGGTGCTGCTGTTCTCTCTGGCTTTACTGGCCTCTCTGAAGGTTTTCCACTCAGCTCCCGGTCATGCTCCACCAGCTGTATCGATGGAAACTCTCAAACGACTCTCTCTGGAAGGGGAGAAGCTAGTGGATGAGGAGGTGCAGAGAGCTCTCTATGGCGTTAAGCAGATGAAAGAGGTGATGGCCAGCAATGAGGAGAAACACGAGCAACTGATCAAGACGCTTCAAAACagcagagaaaagaagaagGAGGTGGCAGAGATGGCTCAGCATGTGGTAAAGAAGTTGGACGAGGCTGAGCAGCAGTGTAAGGACACTTTGAAGTCTTTGTGGGACGAGTGCCGACCCTGCCTGCAAGATGCCTGCAAGAGCTTCTACAACACCACCTGCCGTCGTGGCTTTGCTACTTTCTCCAGTAAGGTGGAAGGCTTCTTCCACAGGGTAAGCACACACTTTGGCTTGCCTAGCCCTCAGGAAGAACTCACTGTGAACAAGAGTGCAGAGATGCCCGACCTGGACTTGAGGAAGATAGAGGACTCATTTAACAATCTGGTCTCCAAAGTTGACATCCTGGTAAACCGCAGCATAGCACTAGTGTTCAGATTCCACAGCAAGCTGGATGAAACACTGCAGCAGACCTTCACTCCAGAGCCACAAGTAGATACGGAGATCAAAGCACTGGACTCAGACTTCCTGCATGGAGTAGGAGTAGGGCTCAAGGAAGTGTTGGAGTCCTTTGTTGACTTTACGAGCAGCGTGATGGAGGAGTTTGAATCTGTGATCACTCAGGTCTTTGATGACCTGCATGGGGTCATCGAGGAAGCAGAGACAGAACAAGGTAGATGTTTGCTCCCGGGATTTGTTCAGAAGAAGAAGTTGTGTAAAGATCTGCGCAGACAGTCAGCAGAGTGCTGGCAGCTCCAGAGCAAGTGCCAAGCCTGCCAGGGACCTCTATTCTCTGGTAATGAGTGTCCAAGCATGCGGGAGTTACATATTGAGCTGAATGAAGTATCTGAGCTTCTGGAGGTTGCTAAGGAGCAGTATGAAGAGGTTCTAGGTATCGTGCAGCGTCACACTGAGGACACCGTCAGCTGGATCAACAACATGGCTGCCCAGTTTGGCTGGGTGGCAGAGCTTGCTGATGGTGGTGTCACAAATGAGAACGTCTTCAGCATCACCACGGCAGTTAATGTTCCAGGAGAAGAAATGAACACTCCAGTGGCTGACACTAAGGTTGAGGTGAACATCCTGAACGCTCCTCCTCTTACACTCAATGTTCCAGGCAACCTGCAGCCACAAGACCCTGCTTTCATACAGTACATAGCCAATGAGGCTTTGGGGTTCTACAAACAGAAGATCGGGCTGGAAGATGCTTGAGACTGTCTGGAGGAGAACTATATCTTTTACACTTGGATACACAGATGTAGCTGTAGAAGTGTG

Function

symbol description
clul1 Predicted to enable misfolded protein binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space and nucleus. Is expressed in cranial blood vessel and photoreceptor cell. Orthologous to human CLUL1 (clusterin like 1).

NR:

description
clusterin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937238.2 True 1514 mRNA 0.50 9 23041108 23050113

Neighbor

gene id symbol gene type direction distance location
adcyap1b LOC100304507 coding downstream 50492 22986661 ~ 22990616 (-)
emilin2a LOC108268130 coding downstream 189950 22838027 ~ 22851158 (-)
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding downstream 339957 22679189 ~ 22701151 (-)
LOC113540005 NA coding downstream 378626 22653613 ~ 22662482 (-)
ctnnd2b ctnnd2,ctnnd2b,LOC107746909,LOC107686039 coding downstream 414085 22545958 ~ 22627023 (-)
mrc1b LOC108268341 coding upstream 100013 23150126 ~ 23174379 (-)
si:ch211-106h4.9 LOC108267629 coding upstream 179937 23230050 ~ 23263297 (-)
e2f5 LOC108268108,LOC108437220 coding upstream 234923 23285036 ~ 23291998 (-)
and2 LOC108267411 coding upstream 268422 23318535 ~ 23322611 (-)
nol7 NA coding upstream 326343 23376456 ~ 23382888 (-)
G69254 NA non-coding downstream 231859 22808906 ~ 22809249 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding downstream 235200 22803386 ~ 22805908 (-)
G69233 NA non-coding downstream 269096 22771386 ~ 22772012 (-)
G69203 NA non-coding downstream 363190 22677376 ~ 22677918 (-)
G69183 NA non-coding downstream 388662 22649939 ~ 22652446 (-)
G69320 NA non-coding upstream 4401 23054514 ~ 23055383 (-)
LOC117597081 NA non-coding upstream 222049 23272162 ~ 23273614 (-)
G69503 NA non-coding upstream 228462 23278575 ~ 23278782 (-)
G69551 NA non-coding upstream 346551 23396664 ~ 23397963 (-)
LOC113540115 NA non-coding upstream 403120 23453233 ~ 23454221 (-)
LOC113540019 LOC108268143 other downstream 405020 22629615 ~ 22636088 (-)
G68760 NA other downstream 1105939 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1670098 21354619 ~ 21371010 (-)
G68462 NA other downstream 1711858 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1727211 21304692 ~ 21313897 (-)
lrrcc1 lrrcc1 other upstream 241935 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 280903 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 429852 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 443266 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 444922 23495035 ~ 23495897 (-)

Expression


Co-expression Network