rbm4.1 (LOC108267459,LOC106608592)


Basic Information

Item Value
gene id rbm4.1
gene name LOC108267459,LOC106608592
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12185524 ~ 12189447 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937264.2
TATAGAGTGCAGCTCGTGACAGGACCCAGGTGCTGATCACGTGGTTATTGATGAGAAAGCAGTGATTTCGGGGTTCGTTAGCACTGATGTCGAATCAGCGATATTAGCCTCGTTAGCTAGTTCATTCGAGAGCCTCTGCTCGTTGTATTGCTACCTAGTGAGCTGTTGCCTGATGTCTTTGAGGCCCCAGCTGTGACCTCCACACACCAGAATGGTCAAGATCTTTGTAGGGAACCTTTCCCCAAACACAACTACAGACGAGCTTCGGTCCTTGTTCTCCCAGTATGGTAAAATATCCGAATGTGACATCGTGAAGAACTTCGGCTTCGTCCACATGGAAAACAAAGCTGAGGCCGAGGAAGCCATTCGCAGCCTTCACCATTATATGCTCAACGGTCTGGCCATGAACGTGGAGATGAGCCGAGGGAAACCCAAAGCCTCCACCAAGCTCCATGTAGGCAATATCAGTAGTAGTTGTACCAATCAGGAGCTGCGGGCCAAGTTTGAGGAGTTTGGCCCTGTGGTTGAGTGCGACATAGTAAAGGATTATGCCTTCGTCCACATGGAGCGAGTGGAGGATGCGATGGAGGCCATCCGAGGCCTAGACAACACGGCATTTCAAGGCAAACTGATGAGCGTGAAGCTTTCGACTAGCCGCCTGCGTACAGCACCGGGAATGGGAGAGAGAACGGGTTGTTATCGGTGCGGGCAGGAAGGCCACTGGTCCAAAGAGTGCCCACTGGACCAGAACGGCTCCTACCGCGAGGGCCAGGGCTCAGAGGGATATGGCGCTCCCCGGTTCGGTGCGAATGGCGGTGGTGGTCGCGGTTTCCAACAGGGCTTCAATGGCGAACCGAGCTTTGGCAGCAACTATGGGCCTGTGCAAGGCTTCTCCCGTGGTGCTGGTTATGGGGGTCCTGGGTATGGCAGGGGCATGGGCATGGGCACGAGCACAAGCACGGGCACGGGCTATAACGGTGCGATGAGTTTCGGTGTTGCGGCGGGATACGGCATGGGCGCGACGTACGGCAGTGAGGCGGCATACAGCAGCGGTGTCGGCTACGGCAGCGCGGTGCCTGGGTTCCCTGCGCGGCGAGCGTCCTATGATGAACGGGATCCGTACGGGGTGGTGGACTACTACGAAAAGTATCGTGCGCGTCCCTATGGAGGCAGTTATTTTGATGACAGACAAGCTGTCCCGCTTCCCGGCCCTCCTCCTCCCCCTGCGTCCTCAGCCATAAGCACAGAGCGCATGCCCTCGTCTAGCCTTGACCTCTATGAGCGAAACCCCCTCGCTCCTCCTCAGGCTCCGGGTTCTTCGTACTACGGCCGTGATAGGAGCCCTATTCGAAGGCTTCCTCTCGAGGTGGAAGGATACGCGTATGATCGTGCGCATGTCGCCCCCATCTCTTCGCTTCCTCGGAGCTCGGCGTTCGACATGCCGCGGGATCCTTACACCGACCGGGCACGCTACGCGTATTAAGCTAACATCTGTGCGCGATTCATACGTGTGCACAACACAGACTATACAGTACATTGGATGTTGAAAAAGCTCGTGATGTTTCTGGACGCGTGTGTAGCATTCTGTATTGAGTAGTAGTCATGCTATCATGTGAAATGTCCTGTGGTCgatttttgttattgtttaagCTTACTCACACGGTGCAGTCATATTCCTAGCAGGAAAATCCTTGAGTGCCCTAATGATTAACTGGTTGTGTTGTGATgactcttgttttttttgcaggtaTTCTTCAATCATGCCTCCACTGACACAGTCACTCAGTCATCACTTTTAACCTTACAGTGAATACTATGGTGCTTGAGTGTGGTGGAGCAGATTAGGTGCTTTATTCTAGTAGTTGTATGTTATGTTCAGTATTACTTGTAGGTGTTATCAGAGTAGCATTTTGCTAACATTTTCAGCCTGGTTTTAGttggctttttttgtttttgtttatctcCCAAGGAGATAACACAACGCCTAAATTCATACGGAATCCTGCTTGAGTAGACGGGACGATTACACATTTGGAATTCTGTAAACTTTTACCTGTACTGTTAGGAATGTAGGAATACTAATTAAGGAATAATCTCTATAATCCTCAACTGGGTGggttttttaaatcttgttttGATGTTACATGGTTTTTAATGTAGATACTGACTAATCTacttaaaaatattgtaatctTAAATCAGAATTGGAGCAAATCGATATGTAGTGTATAGAATAAATCAGCTGAAACCAGGTTTATAGCAGTTTTAGACCTGTAGATTTTGAACCGAACCAGTAAATATCAGCCTTGATCTGAAACGTCAGATCGAAGAGCGGAGAAGTCAGATCAATttctttgtgattttctttctgtgttGAAACTGATTATGCTATTATTTCTGCTCTTGATGCAGTGATCTTTTTAATACTGTTGGTTTTGTTATCTCTGTGAGGAAACGATCAGTTCACCTCTGTGCTTCAAAATCTTTCAGCATGAACAGTCATCATGAAGGCCAGACTCTACGGTAGTTCACACAAATGTAGACTTCTGTTTGACTACAGTAAATTTATAGACCCCTTGGTAAATGTATAGATCCGCACTATATAAAATTAGACCACTACAAAGAGTGCTgtgatgtttttaattaaatgagcCAACTtcttctgtaataaaatgatcCCACTGGAAAGGTCATAGGCAGCAGCAGcactagtagtagcagcagttgCACTGACAGTAGGACTTATCCTTGTAAGTTGTATTGCAATTTATTCCTTAATAAAGGCACTGTATGCA
>XM_026937265.2
TATAATTCTTGCCTGTAGTAATGAAGGTGCTCTCGGTGTGTGAAATGAGAGTGGgcggtgtatgtgtgtgtgtgtgtgtgtgtgtgtctgtcctcGCCATTTCAACCCAGACCGGCGAGTTCTCAGAAACTACTGCAAAGGCCCCAGCTGTGACCTCCACACACCAGAATGGTCAAGATCTTTGTAGGGAACCTTTCCCCAAACACAACTACAGACGAGCTTCGGTCCTTGTTCTCCCAGTATGGTAAAATATCCGAATGTGACATCGTGAAGAACTTCGGCTTCGTCCACATGGAAAACAAAGCTGAGGCCGAGGAAGCCATTCGCAGCCTTCACCATTATATGCTCAACGGTCTGGCCATGAACGTGGAGATGAGCCGAGGGAAACCCAAAGCCTCCACCAAGCTCCATGTAGGCAATATCAGTAGTAGTTGTACCAATCAGGAGCTGCGGGCCAAGTTTGAGGAGTTTGGCCCTGTGGTTGAGTGCGACATAGTAAAGGATTATGCCTTCGTCCACATGGAGCGAGTGGAGGATGCGATGGAGGCCATCCGAGGCCTAGACAACACGGCATTTCAAGGCAAACTGATGAGCGTGAAGCTTTCGACTAGCCGCCTGCGTACAGCACCGGGAATGGGAGAGAGAACGGGTTGTTATCGGTGCGGGCAGGAAGGCCACTGGTCCAAAGAGTGCCCACTGGACCAGAACGGCTCCTACCGCGAGGGCCAGGGCTCAGAGGGATATGGCGCTCCCCGGTTCGGTGCGAATGGCGGTGGTGGTCGCGGTTTCCAACAGGGCTTCAATGGCGAACCGAGCTTTGGCAGCAACTATGGGCCTGTGCAAGGCTTCTCCCGTGGTGCTGGTTATGGGGGTCCTGGGTATGGCAGGGGCATGGGCATGGGCACGAGCACAAGCACGGGCACGGGCTATAACGGTGCGATGAGTTTCGGTGTTGCGGCGGGATACGGCATGGGCGCGACGTACGGCAGTGAGGCGGCATACAGCAGCGGTGTCGGCTACGGCAGCGCGGTGCCTGGGTTCCCTGCGCGGCGAGCGTCCTATGATGAACGGGATCCGTACGGGGTGGTGGACTACTACGAAAAGTATCGTGCGCGTCCCTATGGAGGCAGTTATTTTGATGACAGACAAGCTGTCCCGCTTCCCGGCCCTCCTCCTCCCCCTGCGTCCTCAGCCATAAGCACAGAGCGCATGCCCTCGTCTAGCCTTGACCTCTATGAGCGAAACCCCCTCGCTCCTCCTCAGGCTCCGGGTTCTTCGTACTACGGCCGTGATAGGAGCCCTATTCGAAGGCTTCCTCTCGAGGTGGAAGGATACGCGTATGATCGTGCGCATGTCGCCCCCATCTCTTCGCTTCCTCGGAGCTCGGCGTTCGACATGCCGCGGGATCCTTACACCGACCGGGCACGCTACGCGTATTAAGCTAACATCTGTGCGCGATTCATACGTGTGCACAACACAGACTATACAGTACATTGGATGTTGAAAAAGCTCGTGATGTTTCTGGACGCGTGTGTAGCATTCTGTATTGAGTAGTAGTCATGCTATCATGTGAAATGTCCTGTGGTCgatttttgttattgtttaagCTTACTCACACGGTGCAGTCATATTCCTAGCAGGAAAATCCTTGAGTGCCCTAATGATTAACTGGTTGTGTTGTGATgactcttgttttttttgcaggtaTTCTTCAATCATGCCTCCACTGACACAGTCACTCAGTCATCACTTTTAACCTTACAGTGAATACTATGGTGCTTGAGTGTGGTGGAGCAGATTAGGTGCTTTATTCTAGTAGTTGTATGTTATGTTCAGTATTACTTGTAGGTGTTATCAGAGTAGCATTTTGCTAACATTTTCAGCCTGGTTTTAGttggctttttttgtttttgtttatctcCCAAGGAGATAACACAACGCCTAAATTCATACGGAATCCTGCTTGAGTAGACGGGACGATTACACATTTGGAATTCTGTAAACTTTTACCTGTACTGTTAGGAATGTAGGAATACTAATTAAGGAATAATCTCTATAATCCTCAACTGGGTGggttttttaaatcttgttttGATGTTACATGGTTTTTAATGTAGATACTGACTAATCTacttaaaaatattgtaatctTAAATCAGAATTGGAGCAAATCGATATGTAGTGTATAGAATAAATCAGCTGAAACCAGGTTTATAGCAGTTTTAGACCTGTAGATTTTGAACCGAACCAGTAAATATCAGCCTTGATCTGAAACGTCAGATCGAAGAGCGGAGAAGTCAGATCAATttctttgtgattttctttctgtgttGAAACTGATTATGCTATTATTTCTGCTCTTGATGCAGTGATCTTTTTAATACTGTTGGTTTTGTTATCTCTGTGAGGAAACGATCAGTTCACCTCTGTGCTTCAAAATCTTTCAGCATGAACAGTCATCATGAAGGCCAGACTCTACGGTAGTTCACACAAATGTAGACTTCTGTTTGACTACAGTAAATTTATAGACCCCTTGGTAAATGTATAGATCCGCACTATATAAAATTAGACCACTACAAAGAGTGCTgtgatgtttttaattaaatgagcCAACTtcttctgtaataaaatgatcCCACTGGAAAGGTCATAGGCAGCAGCAGcactagtagtagcagcagttgCACTGACAGTAGGACTTATCCTTGTAAGTTGTATTGCAATTTATTCCTTAATAAAGGCACTGTATGCA

Function

NR:

description
PREDICTED: RNA-binding protein 4.1-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13187 RBM4; RNA-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937264.2 True 2795 mRNA 0.48 3 12185524 12189279
XM_026937265.2 False 2752 mRNA 0.48 3 12185524 12189447

Neighbor

gene id symbol gene type direction distance location
sf1 sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130 coding downstream 3262 12170525 ~ 12182262 (-)
pygmb pygmb,pygm,LOC108267457,LOC108434859 coding downstream 17423 12150419 ~ 12168101 (-)
clcn5b LOC108267828,LOC108434858,LOC107557080,LOC107715429,LOC107733513 coding downstream 37032 12125821 ~ 12148492 (-)
ccnb3 LOC108267136,LOC108410408 coding downstream 102313 12069043 ~ 12083211 (-)
zgc:109889 zgc:109889,LOC108267204,LOC108434857,LOC105007310,LOC107742291,LOC107562726 coding downstream 325411 11834368 ~ 11860113 (-)
LOC113540082 LOC108267460 coding upstream 1375 12190822 ~ 12194683 (-)
rbm4.3 rbm4.3,rbm4b,LOC108267461,LOC107576930,LOC106577685 coding upstream 6070 12195517 ~ 12199352 (-)
ponzr6 LOC108267463 coding upstream 23540 12212987 ~ 12221939 (-)
fxr2 fxr2,LOC108267464,LOC108434865,LOC107750766,LOC107753958 coding upstream 37974 12227421 ~ 12242773 (-)
ugt5g1 LOC108268336 coding upstream 63798 12253245 ~ 12256515 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 62514 12067332 ~ 12123010 (-)
G63062 NA non-coding downstream 181205 12004007 ~ 12004319 (-)
G63058 NA non-coding downstream 212577 11972711 ~ 11972947 (-)
G63031 NA non-coding downstream 287423 11897845 ~ 11898101 (-)
G63015 NA non-coding downstream 317821 11867450 ~ 11867703 (-)
G63219 NA non-coding upstream 136013 12325460 ~ 12325671 (-)
G63267 NA non-coding upstream 164945 12354392 ~ 12355772 (-)
G63502 NA non-coding upstream 477994 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 520182 12709629 ~ 12709841 (-)
G63578 NA non-coding upstream 578502 12767949 ~ 12797341 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 218621 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 650281 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 769627 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 825480 11266384 ~ 11360044 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 57515 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 82771 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 295276 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1096552 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1246609 13436056 ~ 13440520 (-)

Expression


Co-expression Network