LOC113547277


Basic Information

Item Value
gene id LOC113547277
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6708381 ~ 6713301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947536.2
AAGCTTTTATCACTGACACTACACTATATAAGCATCATCACTTCCCTCAGTGTGTTACATCAAGCAAGAAGAGACTCCTGATCAGACTGCATGAACTATGGCTCATCAGACTGACGTGGTGTTACTTCTTATTCTCGCCATAGCAGCAACAGCCTTTGCTAATGTGGTGAAACCTCTGACagCTGCTGATTTTGATAAGATTGTGCAagAGTCAGCTGGACGCCGTCAAGCAAAAAGCAGGTGTTTCGGATGCTGTCCATTTGGCTGGGTGTTCTATGGTGGAAGTTGCTTCACGTATCAGGCCTCCAGCATGGACTGGATATCAGCTGAGaAATACTGTCTGAATCTCAATGCACACTTGGTCTCAATGCGCAACGAAAATGAATATCAGCTGGTTAAGGCTCTTATCCGTGCTCATGACCCCCAGGAGAAGCCAACATGGATCGGCCTCAGTGGCTGTCAGAAGAGAAATAACTGGTTATGGTCTGATGGCACCAAATTGACTTTCACCAAGTGGAATCCAACTgaaccaaattttaaaaatgaagaatgCTGTGTGCTTATAAACTTCGACGGCAGGAAGGACTGGGTCGATGCTCCATGTGAATGGACATATCACTTTGTGTGTGCCACGAAGCCTATCTGAAATGTCAGAAATTTTTACCTTGTCAATGATGCATTTATAAAAAACTCACTTTGGCAACTTGCCATAATTTGAGCAATAAAAAAACTAcactttggtgttaatgaaattaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947536.2 True 758 mRNA 0.43 8 6708381 6713301

Neighbor

gene id symbol gene type direction distance location
LOC113547232 LOC108262378 coding upstream 25065 6644528 ~ 6683316 (+)
dhx30 dhx30 coding upstream 105970 6580355 ~ 6602411 (+)
LOC113547283 NA coding upstream 131479 6572068 ~ 6576902 (+)
wrnip1 wrnip1 coding upstream 136304 6550985 ~ 6572077 (+)
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 503491 6202522 ~ 6204890 (+)
LOC113547278 NA coding downstream 506 6713807 ~ 6719716 (+)
LOC113547276 NA coding downstream 20283 6733584 ~ 6737199 (+)
gpaa1 gpaa1,LOC107671733 coding downstream 27272 6740573 ~ 6755800 (+)
sharpin sharpin coding downstream 46100 6759401 ~ 6768736 (+)
LOC113526581 LOC108267314,LOC102787731 coding downstream 523769 7237070 ~ 7334917 (+)
LOC113547233 NA non-coding upstream 56535 6648782 ~ 6651846 (+)
LOC113547253 NA non-coding upstream 84730 6622836 ~ 6623651 (+)
trnar-ucu_1 NA non-coding upstream 277804 6430486 ~ 6430577 (+)
G60384 NA non-coding upstream 282037 6426119 ~ 6426344 (+)
G60362 NA non-coding upstream 294368 6413800 ~ 6414013 (+)
G60529 NA non-coding downstream 75919 6789220 ~ 6797109 (+)
LOC113527002 NA non-coding downstream 89155 6802456 ~ 6805176 (+)
G60536 NA non-coding downstream 96865 6810166 ~ 6812401 (+)
G60548 NA non-coding downstream 163730 6877031 ~ 6895222 (+)
G60554 NA non-coding downstream 173850 6887151 ~ 6906198 (+)
LOC113547228 NA other upstream 4035 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 111780 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 564579 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 1112156 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1316552 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1342755 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 1982051 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2011244 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 2181169 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 3045159 9758460 ~ 9774049 (+)

Expression


Co-expression Network