LOC113540124


Basic Information

Item Value
gene id LOC113540124
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28173321 ~ 28196057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303542.1
ACTTGCTTTTCTAAAGTAACGTGTATCTGTGTTTAATCTGAAAGTTTTATGCCACAGTCTGAGGTGAACAATAAAGAAGATGAGGATTACTATCCtggctttttttatttggtcATGTCAGGCTGTGTGGGTAATTGCAGAAAACTGTCCACGTCCACCACTTGAAAACGGCTTTTTCGTCCCACATTTGGAAAAATACGACCATGGCGTTAGTATTTCCTACGGCTGTAACACGGGCCTGAAACCTGCTCTCGAAACATGGTGGGGAGAGATAACATGCAGAAATGGCCAATGGTCACACGAACCTCAGTGTATTGATAATACATGGTGTATTGCCCCACATGTGCCAAACGCCCAGCCTGTACATGAGTTACAAACATATTATCCTCCTAGTGACGATGTTAGTTTTAAATGTGACTACGGCTATGAGTTTGAAGGAGGAAAGTCAGAAGCACAGTGTGTAAATGGAACTTGGAGGCTGCCAGTGTGTAAACGAAAGCCTAAAACTTGTGATCCTCCTCCCCGTGTTTACAATGGAATGATCTTACAACCTTACCAGGATGTTTTCGAGCACGGGGATCAGCTTGAGTATGTTTGTGCAAAAGGATATAACCAACGTACAAGCAATTATAACACTTGTCATAACGGCAAGTGGTCCTCTAGTCCTAGTTGTGATAAgccactgtgtcctaaaccacaggTGCAAAATGCTTATCCTGCAGCTGCATTAAAAAACTCCTATTATAATGGAGACACTGTAAGATTTGTATGTAACAGAGGCTATAGGTTTGAAGGAACAGATTCTGCAGAGTGTGTAGATGAAACTTGGAGGCTGCCAGTGTGTAAAGATCCAACATCATGTACTACCCCACATGTGCCAAATGCCCGACCTGCAGAAACGTTAGCAGAGGTCTATTCTAATGGAAGATATGTGAGATTTGAATGTGACAGCGGCTATGAGTTTGAAAGAAGAGACCCATATGCACGGTGTGTAGATGGAACTTGGAGGCTGCCAGTGTgtCAACTAAAGTGTAGTGTCCCACATGTGCCTAACGCCCGACCTCGAGAAGGGTTAGACGCTTCCTATAGTAGTGGAAGGTTTGTTACATTTGAATGTAACCGCGGCTATGAGTTTGCAGGATTACATTATGCACAGTGTGTAGATGGAACTTGGAGGGTGCCAGTGTGTAAACCTCGAGGTGAAACAGTGTGTACTGCTCCACATGTGCCAAACGCCAAACCTGCTAATGAGTTAGCATCGTTCTATGCTACTGGACGCACTGTTAGATTTGTATGTGACAGCGGCTATGAGTTTGAAGGAGCATCTTATGCACAGTGTGTATATGGAACTTGGAGGCTGCCCGTCTGTAAAGGAGAACACGCTCATCCAGATTCCCATAGACATCATGACAGCTCTGAGGACCGTGGTGGATCTCTAGGTCCTGATACTGTGGTACTGTCGCCTGTCAGTATTTGTGGATCTCAACCCTTTATTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGTTAAAAGTTCAATGTCAGAGATTTTATAAGCTACAAGGACCTGAAAAAATAAGTTGTGTTAATGAAAAATGGACAGAGCTTCCAGTGTGTAAACCTCCGTGTAAACTGGATAGGACACTTATTCATTCTAATGATGAATATctgcaggagggtgaagagaaGAGATTTTACTGTAGAGGATCAATTAAGACAATAACTATCTACTGCTCTGAAGGAAGAACACTCTATGGTGAATGTCGCTTCTTCGACTGGTGATCTGTATCAACGGCTAAATCAGAAAAACCGACATCTGCAGAGCTCCTGCTATTGATCAGAAATCTTCCTTCTCgagtaaatgtttttaagcaaaaaaatcTGCTAAGAAGAAAATGCCATTCAGCCTCACTGTGTGTTGGAGGTTTAACTCGTTTAATTCCTGACTTATTATTCAGCTGTTAGTGTTTAGTAACTACAGTGGAACTATAAAGAAGGATTTACATTtttgagagtgaggaatgtaaatctggaccacttaagataaaaaaattgtaaaaaataaataaataaatctatccTGTGTGAAGATGAACTGAAGATGGTGGATTATtacataaacaaagaaaaacagatctGAACCATTAAAATTTATGATAAA
>XM_034303543.1
ACTTGCTTTTCTAAAGTAACGTGTATCTGTGTTTAATCTGAAAGTTTTATGCCACAGTCTGAGGTGAACAATAAAGAAGATGAGGATTACTATCCtggctttttttatttggtcATGTCAGGCTGTGTGGGTAATTGCAGAAAACTGTCCACGTCCACCACTTGAAAACGGCTTTTTCGTCCCACATTTGGAAAAATACGACCATGGCGTTAGTATTTCCTACGGCTGTAACACGGGCCTGAAACCTGCTCTCGAAACATGGTGGGGAGAGATAACATGCAGAAATGGCCAATGGTCACACGAACCTCAGTGTATTGATAATACATGGTGTATTGCCCCACATGTGCCAAACGCCCAGCCTGTACATGAGTTACAAACATATTATCCTCCTAGTGACGATGTTAGTTTTAAATGTGACTACGGCTATGAGTTTGAAGGAGGAAAGTCAGAAGCACAGTGTGTAAATGGAACTTGGAGGCTGCCAGTGTGTAAACGAAAGCCTAAAACTTGTGATCCTCCTCCCCGTGTTTACAATGGAATGATCTTACAACCTTACCAGGATGTTTTCGAGCACGGGGATCAGCTTGAGTATGTTTGTGCAAAAGGATATAACCAACGTACAAGCAATTATAACACTTGTCATAACGGCAAGTGGTCCTCTAGTCCTAGTTGTGATAAgccactgtgtcctaaaccacaggTGCAAAATGCTTATCCTGCAGCTGCATTAAAAAACTCCTATTATAATGGAGACACTGTAAGATTTGTATGTAACAGAGGCTATAGGTTTGAAGGAACAGATTCTGCAGAGTGTGTAGATGAAACTTGGAGGCTGCCAGTGTGTAAAGATCCAACATCATGTACTACCCCACATGTGCCAAATGCCCGACCTGCAGAAACGTTAGCAGAGGTCTATTCTAATGGAAGATATGTGAGATTTGAATGTGACAGCGGCTATGAGTTTGAAAGAAGAGACCCATATGCACGGTGTGTAGATGGAACTTGGAGGCTGCCAGTGTgtCAACTAAAGTGTAGTGTCCCACATGTGCCTAACGCCCGACCTCGAGAAGGGTTAGACGCTTCCTATAGTAGTGGAAGGTTTGTTACATTTGAATGTAACCGCGGCTATGAGTTTGCAGGATTACATTATGCACAGTGTGTAGATGGAACTTGGAGGGTGCCAGTGTGTAAACCTCGAGGTGAAACAGTGTGTACTGCTCCACATGTGCCAAACGCCAAACCTGCTAATGAGTTAGCATCGTTCTATGCTACTGGACGCACTGTTAGATTTGTATGTGACAGCGGCTATGAGTTTGAAGGAGCATCTTATGCACAGTGTGTATATGGAACTTGGAGGCTGCCCGTCTGTAAAGTGGTTGCAGTTGGATGTTGGTACAAAACCTTCCAGAAACTTAGGAaagatattaatttaaaaataaaaatgttccagGAGAACACGCTCATCCAGATTCCCATAGACATCATGACAGCTCTGAGGACCGTGGTGGATCTCTAGGTCCTGATACTGTGGTACTGTCGCCTGTCAGTATTTGTGGATCTCAACCCTTTATTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGT

Function

GO: NA

KEGG:

id description
K03906 F13B; coagulation factor XIII B polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303542.1 True 2168 mRNA 0.41 13 28173321 28196057
XM_034303543.1 False 1612 mRNA 0.44 10 28174936 28196057

Neighbor

gene id symbol gene type direction distance location
LOC113540126 NA coding downstream 2340 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 32414 28124082 ~ 28140907 (-)
ahsg2 LOC108267477 coding downstream 51218 28117092 ~ 28122103 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding downstream 79384 28075616 ~ 28093937 (-)
cpdp LOC108268310,LOC108430687,LOC105899208 coding downstream 108792 28056712 ~ 28064529 (-)
cdc73 cdc73 coding upstream 42839 28238896 ~ 28275315 (-)
ro60 trove2 coding upstream 80639 28276696 ~ 28286658 (-)
shha shh coding upstream 280374 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 378851 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 415134 28611191 ~ 28619112 (-)
G72658 pfn2,pfn2l non-coding downstream 28455 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 32883 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 104044 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 105237 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 160517 28011684 ~ 28012804 (-)
G72709 NA non-coding upstream 147077 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 169600 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 201604 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 471266 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 516977 28713034 ~ 28717955 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 131536 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 617334 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 689488 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 740643 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 777098 27396151 ~ 27396223 (-)
LOC117597043 NA other upstream 1934 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 40129 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 40667 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 452267 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 591557 28787614 ~ 28791829 (-)

Expression


Co-expression Network