LOC113540126


Basic Information

Item Value
gene id LOC113540126
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28157829 ~ 28170981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303544.1
GCAACTTGCTTTTCTAAAGTAGTGTGTATCTGTGGTTAATCTGAAGGTTTTACGCTGCACTCTGAGGTGAACAACAGAGAAGATGAGGATTATTATCCtggctttttttatttggtcATGTCAGACTGTGAGGGTAATTGCAGAAAACTGTCCACGTCCACCACTTGAAAATGGCTTTTTCGTCCCACATTTGGAAAAATACGACCATGGCGTTAGTATTTCCTACGGATGTAACACGGGCCTGAAACCTGCTCTCAAAACATGGTGGGGAGAGATAACATGCACAAATGGCCAATGGTCACACGAACCTCAGTGTATTGATAATACATGGTGTATTGCCCCACATGTGCCAAACGCCCAGCCTGTACATGAGTTACGAACATATTATCCTCCTAGTGACGATGTTAGTTTTCAATGTGACTACGGCTATGAGTTTGAAGGAGGAAAGTCAGAAGCACGGTGTGAAGATGGAACTTGGAGGCTGCCAGTGTGTAAACGAAAGCCTAAAACTTGTGATCCTCCTCATCGTGTTTACAATGGAATGATCTTACAACCTTACCAGGATGTTTTCGAGCACAGGGAACAGATTGAGTATGTTTGCAGAAATGGATATAAGATGCATGGACACAAATATAACACTTGTCATAATGGCAAGTGGTCCTCTAGTCCTAGTTGTGTTCTAGATAAACCAACGTGTCCTAAACCACAGGTGCAAAATGCTTATCCTGCAGCTGCATTAAAAAACTCCTATAATAATGGAGACACTGTAAGATTTGTATGTAACAGAGGCTATAGGTTTGAAGGAACAGATTCTGCAGAGTGTGTAGATGGAACTTGGAGGCTGCCAGTGTGTAAAGATCCAACATCATGTACTACCCCACATGTGCCAAATGCCCGACCTGCAGAAACGTTAGCAGAGGTCTATTCTAATGGAAGATATGTGAGATTTGAATGTGACAGCGGCTATGAGTTTGAAAGAAGAGACCCATATGCACGGTGTGAAGATGGAACTTGGAGGCTGCCAGTGTGTCAAATAAAGTGTAGTGTCCCACATGTGCCAAACGCCCGACCTCTAGAAGGGTTAGACGCTTCCTATAGTACTGGAAGGTTTGTTACATTTGAATGTAACCCCGGCTATGAGTTTGCAGGATTACATTATGCACAGTGTGTAGATGGAACTTGGAGGCTGCCAGTGTGTAAACCTCGAGGTGAAACAGTGTGTACTGCTCCACATGTGCCAAACGCCAAACCTGCTGATGAGTTAGCATCGTTCTATGCTACTGGACGCACTGTTAGATTTGAATGTGACAGCGGCTATGAGTTTGAAGGAATATCTTATGCACAGTGTGTATATGGAACTTGGAGGCTGCCAGTCTGTAAAGATTCCCATAGACATCATGACAGCTCTGAGGACCGTGGTGGATCTCTAGGTCCTGATACTGTGGTACTGTTGCCTGTCAGTATTTGTGGATCTCAACCCTTTGTTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGTTAAAAGTTCAATGTCAGAGATTTTTTAAACTACAAGGACCTGAAAAAATAAGATGTGTTAATGAAAAATGGACAGAGCTCCCAGTGTGTAAGCCTCCGTGTAAACTGGATAGGACACTTATTCATTCTAATGATGAATATctgcaggagggtgaagagaaGACATTTTACTGTCATAACTCATATAAGAAAACGACTGTCCGCTGCTTTAAAGGAACAGCAATCTATAGTGAATGTCGCCTCTTCGACTGGTGATCTGTATCAACGGCTAAATCAGAAAAACCGACATCTGCAGAGCTCCTGCTATTGATCAGAAATCTTCCTTCTCAGTATAAATGCTCACTTTTCaaccaaaataaaagcatatcaCTTGTG
>XM_034303545.1
CGTGTATCTGTGTTTAATCTGAAAGTTTTACGCTGCACTCTGAGGTGAACAATAAAGAAGATGAGGATTATTATCCtggctttttttatttggtcATGTCAGACTGTGAGGGTAATTGCAGAAAACTGTCCACGTCCACCACTTGAAAATGGCTTTTTCGTCCCACATTTGGAAAAATACGACCATGGCGTTAGTATTTCCTACGGATGTAACACGGGCCTGAAACCTGCTCTCAAAACATGGTGGGGAGAGATAACATGCACAAATGGCCAATGGTCACACGAACCTCAGTGTATTGATAATACATGGTGTATTGCCCCACATGTGCCAAACGCCCAGCCTGTACATGAGTTACGAACATATTATCCTCCTAGTGACGATGTTAGTTTTCAATGTGACTACGGCTATGAGTTTGAAGGAGGAAAGTCAGAAGCACGGTGTGAAGATGGAACTTGGAGGCTGCCAGTGTGTAAACGAAAGCCTAAAACTTGTGATCCTCCTCATCGTGTTTACAATGGAATGATCTTACAACCTTACCAGGATGTTTTCGAGCACAGGGAACAGATTGAGTATGTTTGCAGAAATGGATATAAGATGCATGGACACAAATATAACACTTGTCATAATGGCAAGTGGTCCTCTAGTCCTAGTTGTGTTCTAGATAAACCAACGTGTCCTAAACCACAGGTGCAAAATGCTTATCCTGCAGCTGCATTAAAAAACTCCTATAATAATGGAGACACTGTAAGATTTGTATGTAACAGAGGCTATAGGTTTGAAGGAACAGATTCTGCAGAGTGTGTAGATGGAACTTGGAGGCTGCCAGTGTGTAAAGATCCAACATCATGTACTACCCCACATGTGCCAAATGCCCGACCTGCAGAAACGTTAGCAGAGGTCTATTCTAATGGAAGATATGTGAGATTTGAATGTGACAGCGGCTATGAGTTTGAAAGAAGAGACCCATATGCACGGTGTGAAGATGGAACTTGGAGGCTGCCAGTGTGTCAAATAAAGTGTAGTGTCCCACATGTGCCAAACGCCCGACCTCTAGAAGGGTTAGACGCTTCCTATAGTACTGGAAGGTTTGTTACATTTGAATGTAACCCCGGCTATGAGTTTGCAGGATTACATTATGCACAGTGTGTAGATGGAACTTGGAGGCTGCCAGTGTGTAAACCTCGAGGTGAAACAGTGTGTACTGCTCCACATGTGCCAAACGCCAAACCTGCTGATGAGTTAGCATCGTTCTATGCTACTGGACGCACTGTTAGATTTGAATGTGACAGCGGCTATGAGTTTGAAGGAATATCTTATGCACAGTGTGTATATGGAACTTGGAGGCTGCCAGTCTGTAAAGATTCCCATAGACATCATGACAGCTCTGAGGACCGTGGTGGATCTCTAGGTCCTGATACTGTGGTACTGTTGCCTGTCAGTATTTGTGGATCTCAACCCTTTGTTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGTTAAAAGTTCAATGTCAGAGATTTTTTAAACTACAAGGACCTGAAAAAATAAGATGTGTTAATGAAAAATGGACAGAGCTCCCAGTGTGTAAGCCTCCGTGTAAACTGGATAGGACACTTATTCATTCTAATGATGAATATctgcaggagggtgaagagaaGACATTTTACTGTCATAACTCATATAAGAAAACGACTGTCCGCTGCTTTAAAGGAACAGCAATCTATAGTGAATGTCGCCTCTTCGACTGGTGATCTGTATCAACGGCTAAATCAGAAAAACCGACATCTGCAGAGCTCCTGCTATTGATCAGAAATCTTCCTTCTCAGTATAAATGCTCACTTTTCaaccaaaataaaagcatatcaCTTGTG

Function

GO: NA

KEGG:

id description
K03906 F13B; coagulation factor XIII B polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303544.1 True 1900 mRNA 0.43 13 28157829 28169477
XM_034303545.1 False 1878 mRNA 0.43 13 28157829 28170981

Neighbor

gene id symbol gene type direction distance location
LOC113540134 LOC108267236 coding downstream 16922 28124082 ~ 28140907 (-)
ahsg2 LOC108267477 coding downstream 35726 28117092 ~ 28122103 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding downstream 63892 28075616 ~ 28093937 (-)
cpdp LOC108268310,LOC108430687,LOC105899208 coding downstream 93300 28056712 ~ 28064529 (-)
dpp6b LOC108267703,LOC108430761 coding downstream 318732 27704281 ~ 27839097 (-)
LOC113540124 NA coding upstream 2340 28173321 ~ 28196057 (-)
cdc73 cdc73 coding upstream 67915 28238896 ~ 28275315 (-)
ro60 trove2 coding upstream 105715 28276696 ~ 28286658 (-)
shha shh coding upstream 305450 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 403927 28574908 ~ 28605243 (-)
G72658 pfn2,pfn2l non-coding downstream 12963 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 17391 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 88552 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 89745 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 145025 28011684 ~ 28012804 (-)
G72709 NA non-coding upstream 172153 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 194676 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 226680 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 496342 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 542053 28713034 ~ 28717955 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 116044 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 601842 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 673996 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 725151 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 761606 27396151 ~ 27396223 (-)
LOC117597043 NA other upstream 27010 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 65205 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 65743 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 477343 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 616633 28787614 ~ 28791829 (-)

Expression


Co-expression Network