cdc73 (cdc73)


Basic Information

Item Value
gene id cdc73
gene name cdc73
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28238896 ~ 28275315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303645.1
GTGAGCAAGGAAGGCATTTGGAATACGGCCTGACCGTGTATTTGTACTGGGCTTCGATAATACAACATTATTTCTGCGTGAAAGCGAGTGGAAGATGGCGGACGTGTTGAGTGTGCTGCGACAGTACAACATCCAGAAGAAGGAGATCATCGCTAAAGGCGATGAAGTTATCTTTGGGGAATTTTCTTGGCCGAAAAATGTTAAAACGAATTATGTCATCTGGGGAACAGGGAAAGAAGGTCAGCCAAAGGAGTACTACACTCTGGACTCCATCCTGTTCCTGCTCAACAATGTGCACCTTCCTCATCCATCCTACGTGCGGCGAGCTGCTACAGAGAACATTCCTGTAGTCAGGAGACCGGACAGGAAGGACCTGCTGTCATATCTAAATGGAGAAAGCTCTTCATCAACGAGTATTGACAGAAGTGCACCCATCGAGATCGGCCTCCAGCGGCCCACGCAGGTCAAAAGGGCTGCAGATGAAGTGTCTTCTGAAGCAAAAAAGCCACGAATTGAGgatgAAGAACGGGTGCGTCTGGATAAGGAGCGTCTGGCTGCTCGTCTGGAAGGCCATAAGGAAGGCATTGTGCAGACGGATCAGATCCGCTCACTCTCGGAGGCCATGTCCGTGGAGAAGATCGCCGCCATCAAAGCCAAAATCATGGCCAAAAAGCGCTCTACTATTAAAACAGACCTGGACGATGACATCACGCTGAAGCAGAGGAGCTTCGTGGACGCCGAGGTAGACGTGACGAGGGACATcgtgagcagagagagagtgtggagGACCCGGACCACTATCTTACAGAGCAGTGGCAAGAACTTTTCCAAAAGCATCTTTGCCATTCTGCAGTCAGTGAAGGCGAGAGAGGAAGGCCGTGCTCCGGAGCAGAGACCGACGCAGAACCCTACACAGACTGATCCGACGATTCGAAACAAACAGCCGGTGCCGGCGGCGTACAACAGATACGATCAGGAGAGATTTAAAGGGAAAGAGGAAACGGAGGGATTCAAAATCGACACAATGGGAACCTACCACGGCATGACGCTGAAATCTGTGACGGAAGGAGCGTCAGCGCGGAAGGCCCAGACCCCTGCTATGCAGCCTGTTCCGAGACCAGTCTCTCAAGCAAGACCTCCTCCAAACCAAAAGAAAGgCTCGAGAACTccaatcatcatcatcccagCTGCTACGACTTCCTTAATCACAATGCTCAATGCCAAGGACCTCTTGCAGGACCTGAAGTTCGTGACATCCGATGATAAGAAGAAGCAGGGCATCCAGCGGGACAACGAGGTGCTGCTGCAGAGGCGTAAAGAGCAGATTCAGCCCGGAGGATCCAGCATCAGCGTCACCGTTCCCTACCGAGTGATCGACCAGCCGCTCAAACTGGCGCCTCAGGactgGGACCGTGTGGTGGCTGTGTTTGTTCAGGGTCCTGCCTGGCAGTTTAAGGGCTGGCCGTGGCTTCTGCCTGACGGATCTCCTGTGGACATTTTCGCCAAAATCCGAGCATTCCACCTGAAGTACGACGAGGCACGCATGGACCCCAATGTGCAGAAATGGGACGTGACCGTCCTGGAGCTGAGCCACCACAAGCGCCACCTGGACCGACCCGTCTTCCTGCGCTTCTGGGAGACACTGGACAGgtACATGGTGAAACACAAGTCACACTTACGCTTCTGAATCTGCTTTATCATCATCTACAAAATCAACGCGTGGATTCACCTTGATACAGCCAGCAGCACTTTTAGTCAGGCATTCAACaacatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggaatGTGGGAGGGACAGAGATAGAGTGAGCTTACTCAGTTTGTTTTccatgcagctgtgtgtgag

Function

symbol description
cdc73 Predicted to enable RNA polymerase II complex binding activity. Involved in heart development. Acts upstream of or within erythrocyte differentiation; regulation of transcription elongation from RNA polymerase II promoter; and spinal cord oligodendrocyte cell differentiation. Located in nucleus. Part of Cdc73/Paf1 complex. Human ortholog(s) of this gene implicated in hyperparathyroidism and parathyroid carcinoma. Orthologous to human CDC73 (cell division cycle 73).

NR:

description
PREDICTED: parafibromin

GO: NA

KEGG:

id description
K15175 CDC73; parafibromin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303645.1 True 1919 mRNA 0.52 17 28238896 28275315

Neighbor

gene id symbol gene type direction distance location
LOC113540124 NA coding downstream 42839 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 67915 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 97989 28124082 ~ 28140907 (-)
ahsg2 LOC108267477 coding downstream 116793 28117092 ~ 28122103 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding downstream 144959 28075616 ~ 28093937 (-)
ro60 trove2 coding upstream 1381 28276696 ~ 28286658 (-)
shha shh coding upstream 201116 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 299593 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 335876 28611191 ~ 28619112 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding upstream 344501 28619816 ~ 28628143 (-)
G72658 pfn2,pfn2l non-coding downstream 94030 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 98458 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 169619 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 170812 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 226092 28011684 ~ 28012804 (-)
G72709 NA non-coding upstream 67819 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 90342 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 122346 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 392008 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 437719 28713034 ~ 28717955 (-)
trnas-uga_2 NA other downstream 2091 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 2629 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 13293 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 197111 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 682909 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 373009 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 512299 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 598263 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 873323 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 1288906 29564221 ~ 29575727 (-)

Expression


Co-expression Network