ppp1r15a


Basic Information

Item Value
gene id ppp1r15a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18951047 ~ 18954000 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303649.1
TGGTGTCGCTCACAGCATTAGACACAACagccaagaaaagaaaagtagatGAAACATAAAGGCAGCGAGAGACGTTCATGAGCGAAGACACGGCGGATTATTTCTTCATTATGGCACTGCTTCATTCAGGGAAATCAACGACTTTTGTCGATACTTTCAACAATTTCAGCATTTCATCCCGAAATCTTCACTGGAGCGCGCGCCAGGCAACTGGCTGAACTGTCATTTATCAGAGAGTGAGTGTGACTGCGATGGCATCATTTTCCACCTGTTTACGtcttctgttctgttgttgGGGGTCACCACAGACAGCCATGTACCACCCTTCCTTGAAGAATCTTGATCTTTATCCTGACATGACAAAGACAAGTGAAAGGCGTTCACTCTGCTCATACAGGGGAAGGTCCGTCCATTCTGTGTTACAGaacatttgcttttttctgtGTGAAGTCCTCAGGAAAGTCATCCATCACTGTATGAGTGTTACAGAGCTACTAAACATGAAGATGTTCTTCTTGTGTACCACAGAAAAAGTGGTCATGACGGGCAAGACGAAGAATAGAACCACCTGGAACGGCGAAATCAAAATGGCCACCATTTTCAGTAAGACTGTTGATCCACAAATGAAGGTGATGATCCAGTCTGATCAGCTGACAGTGGCAGAAGTTCTGCTCTCAGACTGGCTTGAATGTCAGTCTGAAGAGCAGGATGAAAGTGATGATGGTAGTGATAGTGAAGCAGAATGGAGTGAGGAAGGAGAATGGTCAGATGTCGGAGATTCAGAGATGTCCTCAGAGAACAGAGAGTTATGGGAGTCCTTCTTGAACAACAGTGATCCCTACAATCCTTTCCACTTTTCCTGCCCTACTGAAGATAAAGTAAAGGCTTtagacagtgatgatgatgatgatgaggaggaggaggaggaggaggaggaggaaccTGTTCCTCCTTGTCCTCAGGAGAAAGATGAAACAGAATGGAGTGAGGAAgaagattctgattggtcagatgaaGGTGATTTAGAGATGTCTGCAGAGAGCAGAGAGTTATGGGAGTCCTTTAACAGTGATCCCTATAATCCTCTTTGCTTCTCCTACCCTACTGGAGTCAAAATAAAGCCATCAGAGATTAAACAAAACCACACCCATTCAAGCCCCACAGCCAATGAGACTGAGGCTCACAATCCTGAACAGAGCACAAAGAAACGCGCAAAGAAGGTGTGTTTCAGTGAGAAGGTGACCATCCACAACCTCGAGGCATGGGGCTTTGCAAGCCAGGCAGCGCGAGATGGGTCGTGCTGGATGGAGCTGGCGAGAGATAGAGAGCGTTTCAAAAGGAGAGTGGAGAAAACTGGAGAGATCATCAGCCCGTGTCTCACAGCTCAGCACAGAGCCAGAGTTTTCGACAGACTACTGTTGAACCACTCTGACAGCATTTTAGCAGTTCAGTGATGGCAAACAACTAAAAAATTatggcagcttttttttttttttttttatgcttttgttttatatgGTGCTCTTGTATTTACCTCAACACACTGAAGTTACTGCACTGGgataatcacttttttttgttggttcTATTAGTGTGACTAagtttagttttgcactgttCTGCAAATTTGTATTCTTTTTTACgtatttataacacattccTGAATGTCCACTATGTGGTGTCTTTATTGGGGGAGGGGGATGAACTGAGATTTTCAATAAACATTATGACCTTTA

Function

GO: NA

KEGG:

id description
K14019 PPP1R15A, GADD34; protein phosphatase 1 regulatory subunit 15A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303649.1 True 1736 mRNA 0.44 4 18951047 18954000

Neighbor

gene id symbol gene type direction distance location
sod3a NA coding upstream 99467 18849165 ~ 18851580 (+)
gba3 LOC108267130,LOC108437095 coding upstream 520688 18426358 ~ 18430359 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding upstream 707250 18221624 ~ 18243797 (+)
rap1gds1 rap1gds1,LOC107552992 coding upstream 868617 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 922996 18020211 ~ 18028051 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 216699 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 374031 19328031 ~ 19338707 (+)
trmt44 trmt44,LOC107710993 coding downstream 400380 19354380 ~ 19372755 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 434605 19388605 ~ 19393118 (+)
LOC113540663 cpz coding downstream 440155 19394155 ~ 19407627 (+)
G66887 NA non-coding upstream 39650 18911057 ~ 18911397 (+)
G66888 NA non-coding upstream 40559 18909646 ~ 18910488 (+)
G66865 NA non-coding upstream 87630 18859042 ~ 18863417 (+)
G66855 NA non-coding upstream 117220 18828179 ~ 18833827 (+)
G66754 NA non-coding upstream 281797 18669042 ~ 18669250 (+)
LOC113540244 NA non-coding downstream 166838 19120838 ~ 19122624 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding downstream 391844 19345844 ~ 19351904 (+)
G67208 NA non-coding downstream 419556 19373556 ~ 19375720 (+)
G67209 NA non-coding downstream 428553 19382553 ~ 19451392 (+)
G67227 LOC108267906 non-coding downstream 520495 19474495 ~ 19475474 (+)
G66864 NA other upstream 92395 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 742483 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 807416 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 940085 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1330968 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 1036684 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1193795 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2066258 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 2360218 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2675076 21629076 ~ 21640157 (+)

Expression


Co-expression Network