wdr48b (wdr48,LOC108428893,LOC108268031,LOC103039099)


Basic Information

Item Value
gene id wdr48b
gene name wdr48,LOC108428893,LOC108268031,LOC103039099
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30025069 ~ 30037066 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303697.1
AACCATGGCCCCTACCAATATGGCTGACGCGTTGACGTATGGAGTGCCGGAAGTTGTTGTTCTAATGTCCCGGATGTGTTGCTGATTAGTTGACTGTCAACATGAAAGATGGCGACGCATCACAGGCAAAACGCTGCTGGTCGGAGGAAAGTCCAgGTTTCCTATGTGATAAGAGATGAAGTGGAGAAGTACAACCGCAACGGAGTGAACGCCCTGCAGCTGGATCCCGCCCTGAACCGCCTCTTCACCGCGGGCAGAGACTCCATCATCCGCATATGGAGCGTCAATCAGCACAAACAGGATCCTTATATAGCTTCGATGGAGCATCACACCGACTGGGTGAATGACATAGTACTCTGCTGTAACGGAAAGACGCTGATTTCAGCGTCATCAGATACTACAGTTAAAGTGTGGAACGCACATAAGGGCTTCTGCATGTCCACGTTAAGAACTCATAAGGACTACGTCAAAGCTCTGGCTTATGCGAAAGACAAGGAGCTGGTGGCGTCGGCTGGGCTGGACAGACAGATCTTTCTGTGGGACGTAAACACGCTCACGGCTCTGACCGCTTCCAATAACACGGTCACCACTTCCTCTCTGAGTGGGAACAAAGACTCGATCTACAGCCTTGCTATGAACCAGCTGGGCACCGTCATCGTCTCAGGATCAACAGAAAAGgTCTTGAGGGTCTGGGATCCACGGACATGTGCTAAACTAATGAAGCTGAAAGGACACACAGACAATgtgaaatcattattattaaacagaGACGGTACTCAGTGTCTGTCCGGTAGCTCGGACGGTACGATACGACTGTGGTCTCTGGGTCAGCAGCGCTGCATCGCTACGTACCGGGTCCATGACGAGGGCGTGTGGGCGCTGCAGGCCAACGAAGCCTTCACACACGTCTACTCAGGAGGTCGCGACCGCAAGGTCTACTGTACGGACCTGCGCAACCCAGACATCCGCGTGCTCATATGCGAAGAGAAGGCTCCTGTTCTCAGAATGGAGCTGGACCGATCAGCAGACCCTCCTCCTGCCATTTGGGTGTCCACAACTAAATCCTGCGTGAACAAATGGTCTCTGAAGGGAATGCACAACTTCCGAGCGTCGGGAGACTACGACAACGACTGCAGCGCCCCGCTGACCCCACTGTGTACACAGCCTGAGCAGGCCATTAAAGGTGGTGCCAGCATAATTCAGTGTCACATCCTGAACGACAAGAGACACATCCTCACCAAAGACACCAACAACAACGTGGCATTCTGGGATGTGCTCAAGGCGTGTAAAGGGGAAGACCTCGGCAAAGTGGAGTTCGACGAGGAGATAAAGAAGCGCTTCAAGATGGTCTACGTGCCCAACTGGTTTTCCGTGGACCTTAAAACAGGGATGCTGACCATCACCTTGGACGAGAGCGACTGCTTTGCTGCCTGGGTGTCTGCCAAAGACGCCGGATTCACAAGTCCGGATGGATCGGACCCCAAGCTGAATCTGGGAGGACTGCTGCTCCAGGCTCTGCTCGAGTTCTGGCCTCGAACACACATCAATCCgatggaagaagaagaaggagaagttAATCACGTAAACGGGGAGCAGGAGAACCGGCTTCAGAAAGGCAACGGCTATTTCCAGGTGCCTCCACACACTCCGGTAATCTTCGGCGAGGCAGGGGGAAGGACGCTGTTTAGGTTATTATGTCGAGACTCGGGTGGAGAAACGGAGTCCATGCTGCTGAATGAAACCGTTCCACAGTGGGTCATTGACATTACTGTCGACAAAAACATGCCCAAATTCAACAAGATCCCGTTCTACCTGCAGCCTCACTCATCCTCCGGGGCCAAAACGCTCAAGAAGGACCGTCTGTCGGCCAGCGACATGCTGCAGGTGAGGAAGGTGATGGAGCACGTCTACGAGAAGATCATCAACCTGGACACGGAGTCTCAGACCACAAGCTCATCGGGAACGGAGAAACCCGGAGAGCAGGAGAAGGAAGAGGACATGGCCATGCTCGCCGAGGAGAAAATCGAACTCATGTGCCAGGACCAGGTTCTGGATCCAAACATGGACTTGAGAACAGTGAAGTATTTTATCTGGAAGAGCGGCGGAGACCTGACTCTCCACTACAGACAGAAGTCTACGTGAGAGTGATGGCAGCACacgcatctttttttttttttttttttttttttttccttcaccgCTCTCCTTTCTCATCTGTTTGCTCATGGAGAACGTTCAGCGCCATTCCTCTTCTCTCGCCCTGAGACTGGAAACAGACTTTGTACAGTATACTAATCCAGGacatttctattatttctattattttttttttaatatctttgtttaactttttgtctcttttttttttttttttttttttttcttttaaagatttCCAGTTGGTTGATGATGCACAGGGACATACGTTCTGGAGCATTTAGATGATCACAGATTTTCTGAACCACCCAAGATTTCTGTTAAagtactcaaaaaaaaaa
>XM_034303698.1
TGAACCATGGCCCCTACCAATATGGCTGACGCGTTGACGTATGGAGTGCCGGAAGTTGTTGTTCTAATGTCCCGGATGTGTTGCTGATTAGTTGACTGTCAACATGAAAGATGGCGACGCATCACAGGCAAAACGCTGCTGGTCGGAGGAAAGTCCAgGTTTCCTATGTGATAAGAGATGAAGTGGAGAAGTACAACCGCAACGGAGTGAACGCCCTGCAGCTGGATCCCGCCCTGAACCGCCTCTTCACCGCGGGCAGAGACTCCATCATCCGCATATGGAGCGTCAATCAGCACAAAGATCCTTATATAGCTTCGATGGAGCATCACACCGACTGGGTGAATGACATAGTACTCTGCTGTAACGGAAAGACGCTGATTTCAGCGTCATCAGATACTACAGTTAAAGTGTGGAACGCACATAAGGGCTTCTGCATGTCCACGTTAAGAACTCATAAGGACTACGTCAAAGCTCTGGCTTATGCGAAAGACAAGGAGCTGGTGGCGTCGGCTGGGCTGGACAGACAGATCTTTCTGTGGGACGTAAACACGCTCACGGCTCTGACCGCTTCCAATAACACGGTCACCACTTCCTCTCTGAGTGGGAACAAAGACTCGATCTACAGCCTTGCTATGAACCAGCTGGGCACCGTCATCGTCTCAGGATCAACAGAAAAGgTCTTGAGGGTCTGGGATCCACGGACATGTGCTAAACTAATGAAGCTGAAAGGACACACAGACAATgtgaaatcattattattaaacagaGACGGTACTCAGTGTCTGTCCGGTAGCTCGGACGGTACGATACGACTGTGGTCTCTGGGTCAGCAGCGCTGCATCGCTACGTACCGGGTCCATGACGAGGGCGTGTGGGCGCTGCAGGCCAACGAAGCCTTCACACACGTCTACTCAGGAGGTCGCGACCGCAAGGTCTACTGTACGGACCTGCGCAACCCAGACATCCGCGTGCTCATATGCGAAGAGAAGGCTCCTGTTCTCAGAATGGAGCTGGACCGATCAGCAGACCCTCCTCCTGCCATTTGGGTGTCCACAACTAAATCCTGCGTGAACAAATGGTCTCTGAAGGGAATGCACAACTTCCGAGCGTCGGGAGACTACGACAACGACTGCAGCGCCCCGCTGACCCCACTGTGTACACAGCCTGAGCAGGCCATTAAAGGTGGTGCCAGCATAATTCAGTGTCACATCCTGAACGACAAGAGACACATCCTCACCAAAGACACCAACAACAACGTGGCATTCTGGGATGTGCTCAAGGCGTGTAAAGGGGAAGACCTCGGCAAAGTGGAGTTCGACGAGGAGATAAAGAAGCGCTTCAAGATGGTCTACGTGCCCAACTGGTTTTCCGTGGACCTTAAAACAGGGATGCTGACCATCACCTTGGACGAGAGCGACTGCTTTGCTGCCTGGGTGTCTGCCAAAGACGCCGGATTCACAAGTCCGGATGGATCGGACCCCAAGCTGAATCTGGGAGGACTGCTGCTCCAGGCTCTGCTCGAGTTCTGGCCTCGAACACACATCAATCCgatggaagaagaagaaggagaagttAATCACGTAAACGGGGAGCAGGAGAACCGGCTTCAGAAAGGCAACGGCTATTTCCAGGTGCCTCCACACACTCCGGTAATCTTCGGCGAGGCAGGGGGAAGGACGCTGTTTAGGTTATTATGTCGAGACTCGGGTGGAGAAACGGAGTCCATGCTGCTGAATGAAACCGTTCCACAGTGGGTCATTGACATTACTGTCGACAAAAACATGCCCAAATTCAACAAGATCCCGTTCTACCTGCAGCCTCACTCATCCTCCGGGGCCAAAACGCTCAAGAAGGACCGTCTGTCGGCCAGCGACATGCTGCAGGTGAGGAAGGTGATGGAGCACGTCTACGAGAAGATCATCAACCTGGACACGGAGTCTCAGACCACAAGCTCATCGGGAACGGAGAAACCCGGAGAGCAGGAGAAGGAAGAGGACATGGCCATGCTCGCCGAGGAGAAAATCGAACTCATGTGCCAGGACCAGGTTCTGGATCCAAACATGGACTTGAGAACAGTGAAGTATTTTATCTGGAAGAGCGGCGGAGACCTGACTCTCCACTACAGACAGAAGTCTACGTGAGAGTGATGGCAGCACacgcatctttttttttttttttttttttttttttccttcaccgCTCTCCTTTCTCATCTGTTTGCTCATGGAGAACGTTCAGCGCCATTCCTCTTCTCTCGCCCTGAGACTGGAAACAGACTTTGTACAGTATACTAATCCAGGacatttctattatttctattattttttttttaatatctttgtttaactttttgtctcttttttttttttttttttttttttcttttaaagatttCCAGTTGGTTGATGATGCACAGGGACATACGTTCTGGAGCATTTAGATGATCACAGATTTTCTGAACCACCCAAGATTTCTGTTAAagtactcaaaaaaaaaa
>XM_034303699.1
GGATATTAATTGgagtttttgtgtattttttaaaaaaatttaatgtttattatttaaaggtgACACAATAGCACGGCTTTTAGCTATAACCGCCATGTTCGGTGTGtgtggatttgttttgattAACTTAAATCTGTTGCTATTCACGCACAGCTAGTTAGCAAACTAGCATACTGGGGAGTGGGGATGTGAGAGTTCATGCAGCTTTTTATTTCAGCGCACAGCTGATGGGGAGAAACCTGTGAGATGATGAGAGTTTCCTATGTGATAAGAGATGAAGTGGAGAAGTACAACCGCAACGGAGTGAACGCCCTGCAGCTGGATCCCGCCCTGAACCGCCTCTTCACCGCGGGCAGAGACTCCATCATCCGCATATGGAGCGTCAATCAGCACAAACAGGATCCTTATATAGCTTCGATGGAGCATCACACCGACTGGGTGAATGACATAGTACTCTGCTGTAACGGAAAGACGCTGATTTCAGCGTCATCAGATACTACAGTTAAAGTGTGGAACGCACATAAGGGCTTCTGCATGTCCACGTTAAGAACTCATAAGGACTACGTCAAAGCTCTGGCTTATGCGAAAGACAAGGAGCTGGTGGCGTCGGCTGGGCTGGACAGACAGATCTTTCTGTGGGACGTAAACACGCTCACGGCTCTGACCGCTTCCAATAACACGGTCACCACTTCCTCTCTGAGTGGGAACAAAGACTCGATCTACAGCCTTGCTATGAACCAGCTGGGCACCGTCATCGTCTCAGGATCAACAGAAAAGgTCTTGAGGGTCTGGGATCCACGGACATGTGCTAAACTAATGAAGCTGAAAGGACACACAGACAATgtgaaatcattattattaaacagaGACGGTACTCAGTGTCTGTCCGGTAGCTCGGACGGTACGATACGACTGTGGTCTCTGGGTCAGCAGCGCTGCATCGCTACGTACCGGGTCCATGACGAGGGCGTGTGGGCGCTGCAGGCCAACGAAGCCTTCACACACGTCTACTCAGGAGGTCGCGACCGCAAGGTCTACTGTACGGACCTGCGCAACCCAGACATCCGCGTGCTCATATGCGAAGAGAAGGCTCCTGTTCTCAGAATGGAGCTGGACCGATCAGCAGACCCTCCTCCTGCCATTTGGGTGTCCACAACTAAATCCTGCGTGAACAAATGGTCTCTGAAGGGAATGCACAACTTCCGAGCGTCGGGAGACTACGACAACGACTGCAGCGCCCCGCTGACCCCACTGTGTACACAGCCTGAGCAGGCCATTAAAGGTGGTGCCAGCATAATTCAGTGTCACATCCTGAACGACAAGAGACACATCCTCACCAAAGACACCAACAACAACGTGGCATTCTGGGATGTGCTCAAGGCGTGTAAAGGGGAAGACCTCGGCAAAGTGGAGTTCGACGAGGAGATAAAGAAGCGCTTCAAGATGGTCTACGTGCCCAACTGGTTTTCCGTGGACCTTAAAACAGGGATGCTGACCATCACCTTGGACGAGAGCGACTGCTTTGCTGCCTGGGTGTCTGCCAAAGACGCCGGATTCACAAGTCCGGATGGATCGGACCCCAAGCTGAATCTGGGAGGACTGCTGCTCCAGGCTCTGCTCGAGTTCTGGCCTCGAACACACATCAATCCgatggaagaagaagaaggagaagttAATCACGTAAACGGGGAGCAGGAGAACCGGCTTCAGAAAGGCAACGGCTATTTCCAGGTGCCTCCACACACTCCGGTAATCTTCGGCGAGGCAGGGGGAAGGACGCTGTTTAGGTTATTATGTCGAGACTCGGGTGGAGAAACGGAGTCCATGCTGCTGAATGAAACCGTTCCACAGTGGGTCATTGACATTACTGTCGACAAAAACATGCCCAAATTCAACAAGATCCCGTTCTACCTGCAGCCTCACTCATCCTCCGGGGCCAAAACGCTCAAGAAGGACCGTCTGTCGGCCAGCGACATGCTGCAGGTGAGGAAGGTGATGGAGCACGTCTACGAGAAGATCATCAACCTGGACACGGAGTCTCAGACCACAAGCTCATCGGGAACGGAGAAACCCGGAGAGCAGGAGAAGGAAGAGGACATGGCCATGCTCGCCGAGGAGAAAATCGAACTCATGTGCCAGGACCAGGTTCTGGATCCAAACATGGACTTGAGAACAGTGAAGTATTTTATCTGGAAGAGCGGCGGAGACCTGACTCTCCACTACAGACAGAAGTCTACGTGAGAGTGATGGCAGCACacgcatctttttttttttttttttttttttttttccttcaccgCTCTCCTTTCTCATCTGTTTGCTCATGGAGAACGTTCAGCGCCATTCCTCTTCTCTCGCCCTGAGACTGGAAACAGACTTTGTACAGTATACTAATCCAGGacatttctattatttctattattttttttttaatatctttgtttaactttttgtctcttttttttttttttttttttttttcttttaaagatttCCAGTTGGTTGATGATGCACAGGGACATACGTTCTGGAGCATTTAGATGATCACAGATTTTCTGAACCACCCAAGATTTCTGTTAAagtactcaaaaaaaaaa

Function

symbol description
wdr48 Enables double-stranded DNA binding activity and single-stranded DNA binding activity. Involved in cellular response to DNA damage stimulus; positive regulation of nitrogen compound metabolic process; and protein deubiquitination. Located in nucleus.

NR:

description
PREDICTED: WD repeat-containing protein 48 isoform X1

GO: NA

KEGG:

id description
K15361 WDR48, UAF1; WD repeat-containing protein 48

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303697.1 False 2498 mRNA 0.50 19 30025069 30037064
XM_034303698.1 False 2497 mRNA 0.50 19 30025069 30037066
XM_034303699.1 True 2597 mRNA 0.49 19 30025069 30036526

Neighbor

gene id symbol gene type direction distance location
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding downstream 10504 29903744 ~ 30014565 (-)
brinp3b LOC108267163 coding downstream 125543 29868591 ~ 29899526 (-)
rgs5b LOC108267191 coding downstream 189878 29833662 ~ 29835191 (-)
nos1apb LOC108267139 coding downstream 199928 29813527 ~ 29825141 (-)
ddr2b LOC108267138 coding downstream 212512 29797070 ~ 29812557 (-)
LOC113540054 NA coding upstream 342 30037408 ~ 30043011 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding upstream 13494 30050560 ~ 30056720 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 26984 30064050 ~ 30084861 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding upstream 175323 30212389 ~ 30223320 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding upstream 556640 30593706 ~ 30701045 (-)
G73618 NA non-coding downstream 33 29976671 ~ 30025036 (-)
G73607 NA non-coding downstream 95580 29929264 ~ 29929489 (-)
G73492 NA non-coding downstream 178178 29846674 ~ 29846891 (-)
G73485 NA non-coding downstream 231425 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 244937 29778555 ~ 29780132 (-)
G73652 NA non-coding upstream 58724 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 64374 30101440 ~ 30102870 (-)
LOC113540631 NA non-coding upstream 91662 30128728 ~ 30138872 (-)
G73670 NA non-coding upstream 149830 30186896 ~ 30191121 (-)
G73684 NA non-coding upstream 158613 30195679 ~ 30197576 (-)
G73619 blvra other downstream 2544 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 294212 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 449342 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 853148 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1140104 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 704461 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 736383 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1209994 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1833452 31870518 ~ 31871874 (-)
G74547 NA other upstream 1837243 31874309 ~ 31874827 (-)

Expression


Co-expression Network