LOC113540005


Basic Information

Item Value
gene id LOC113540005
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22653613 ~ 22662482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303845.1
ATGAATACCACTCCCCATCATGACCCACAACATCCAGATGTTTTCTTGGGGAGCACTCAGACTCCACCCTCCAGACCCCTACTTGCATCCAAAGACTCAAAGAGAGTTTGCTTTTACAAGAGTGGAGACCCGCAGTTTTCTGGACACTGGGTAGTCATCAACAGTCGTACGTTCAAGACTTTTGATGCCCTGCTGGACGCCCTTTCAAACAAAGTGCCTCTACCATTTGGGGTACGCACCATCACAACACCCAAAGGTACACACACTATCCGGAGCTTAGATGATCTGCGGCATGGGGCCTCTTATGTGTGCTCAGATCAAAGAAAGGTCAAACCCCTGAACCTGGACGAGATCAACCGGAGACATGTCCCCTGGAACAGCACCAGACCTACTAGTGCAGGACGTCAGGGACGCAGAGGACTGATCCGGCAGCTAGTAAAGAAGAATGAAGTGGGCTGGATGGCAAAAATGGCTGAAAGTTCTGTGACAGTGAGGACACCAAAAAGGCTTGTGGTTTTTAAGAACAGGGATCCCAGCACTAAGCGCATAGTTGTTTTGCAGAGGAGGACAGCTCCGACTTTTGAGGCTCTCTTGGAATACCTTTCCCAAGTGATGCAGTTCTCTGTGGTTAAGCTATACACTGCTGATGGCAGACGCGTTGAAGGTCTTCCAGCCCTGATCCTGTGCTCTGGTGTGATTGTAGCAGCTGGTAATGAACCCTTTCAGCTGGCTAACTTCAATCTCCAAGCATCCACTCAACCCTCACACTCAGTCATATCTGAAACTACGGGGCCAACAAAGACACAGCCATTGCCACaagtTCAACAAAAATCAGTGAGCAGTAGACCAAGATCAAGAAATTTCTCATTATCATCAGAAAGATATTTTGTAAATCAGATCAATATGTCACTAAATGGAAGTCACTCAGAGGACAATGAAGTGAAAATAGGATCGATGGTGAGTGTGAACAACCAAGCCCTAGAATCAGAAGAGATGGAGAAATGTGACTTCATGTCTGGTATAGAGGAACAGGATCGCTTAATTATACCTTCAGATGATGAGATTGAGAAATCATTTCGTGTGAATCAGGATGGCAGCATGACTGTGGAGATGAAAGTTCATCTCACTATAAAGCAAGAGGAGATGATTCACTGGACCACCACAGTGAGTCGAACCTGCGTTAATAGCCAGGACATGGCAGCATTCTCGCAACCAGTCTCAAGCTACAACTCCCCAGATAATAAAGacaataataacagaaaaagagagtCAAATATAGACAACTATGAATCTAAAGATGAGAATACAAAAACTTATAAACCAATCAACTTAAATAAGGAGGGAGACAATCACTGTGGAAATACCATCACTGAGGCCTTGGAAAAACCAAAACCGCGTTTCAGGAGGCTGCCTACTCCAGGACCTAGGCGTGTCAGAAGGAAGGAGACTTCAATGGAGAATATAAAGAGGCTATCACAAACTGAGGTTCAGGAAAGCACAGCTGGTACATACTCATATGTGGAGCACACAGCTGAAGGTGAGCTACTGGAAGGGTACTGTGTTGTCAGTCATAGCAGCTCTAGCAGTACAAGACCTGTACCAAAACCCAGGAAGAAAAATTTGGGAGAATCCAAGCACAATAAgactcactcctctctctcaggGATGGCAGAGGTTCTTCAACTGCACAACAAAGGAAAAGAGATTACAGAAACTGTAATGCATATTCATCAGTCACAGGATACATATGAAAACTATTTTGCAAAAACCTGGGCTGATAAGGATGACAGGTTTGAATTTATGTCTCAAGAACACAAAAAGCCAGACTCAACTGAATCAGGGCCTCAATCTTCAAGCAATGACTGTGACACTGATCTTACCAAACCGTCTGCAAGTTCTGGTTCTGGGAATGCTAGGAACAAAGAACTCTTATCTTTGCTGTCTGGCCAAACAGACCTTTCACAAACAATAAGCAGCAGTGCATCCTCCTTCACCAACTATGAAACTCAAGCTAGATGTGAATCCTCAGACAAAGGAGTGGAGACATCCACTAAAGAGGACTCTGAAAATAAAAGAGTTCCAAgtaagaagacaaaaaaggcacaaaaaTCTGGAAGGTCAAACAAACGTGTGTTtttgcaaagcactgtgacAGATAAAAAGCAGAAAGGTAGTGTTCCAGACTTTTTAAAAGACCTAAAGAACAGCGATTCTCCAGAATCACAGAGCTGTACAGAAAGTGACAAATACGGGCAAAAGgttaaaaagagaaaggaaggtCGGTCACCTCAGAAGGTAAACGCATGTCATGGTAACATGTTGAGGGACACATCTCAATATATAAACTTAGGTCATACTCACATGTTAAGGCCTCacatgaaagaaaaattagACATTATCCCATCGTCTCATTCAGCACCTTTCAAGATTTTGACAAAGCAAAGGTCTGTGAATGGCAGCGTAACAAAATCTCCTAAAGAGAGCAAGGAGTTGAGTGAAAGTATTTCTATGCCAGTGCTCAATTCATCTCCCTGTAACGTGCACCAATATGTGGAAAACTGGCTGGAAAAAATTCACCCTGAATCAGTGCCCTATATGGATGAGTTAAACTCACATGAAGCTAGAGCTAGGTTCCAGATTGAAAGTGAGTTCTCAGACATTTCAGAAATGAGAAGCGAATTAGACAACAGTTTGGTGGAGAACTGTGCCTCTGTTGCAGGCTCTACTGTCAAGAAGCCAGTGTCACGACGACTTGTACAAATTAGGTATGAGGGAGAACCTGTGGAGGCAAAGAACCCTAGAAGATCCTGGAAATCAATGCCAAGTGTGAGAATACACACTGCTGAACAGGAGATTGGCACAAGAAAGAATAAGTCTTCAGAGGACTTGGTTCCCAAATTGCCAGATGCAGGGGGTGAAACATCACCAAACACACAGTTGAACCCTAGGTCAGGTATGAAACAAGTTTTGGAGCAGTTATGTTTATCTATCCAGTTTATCAGAAAAGCCTGTAGTCATTCTCATCTATCATCCttgaagaagaagcagaaatcCAGTAGCCTTCCTGACTTCTCATCACAGTTAGCCTCTGTTTTTGGCTCTCCATCTGAGGCACTTCTCTCCTTCCTGACACTGATGACTCTGAGAGATGGAATAGCCAACTCTGCCAATGAAGTCTCAGGTTCTGCCAATGCTAATAACTCAGGCAGCAATCCAGAGGCTCTGCAGGTCATGCAATCCATACAAAAATTGGCCAGCATAGAGGATGAAGAAGAGCTTAAGGCTAGCCTGGCAAGTCTCCACAGTTCAACTTCTGCTCAGTTAAAGAAGAGCTGGAGAGATTTCCAAGAGAAAAATAATATCAAAGAAAGTCCTCCACTGTCACCAAGACAGTCAGAGCAAGAGTTTGCTCTTGAGGTCAACTCAGAAGAGGAAGCTCAAGATAAAGGGCATATTTTTGGTATCAGAGAGATAATGGATGAGCTTAACATGTGTGAGGATCTCCGCAGAGAGATTTCCTCACTTGTTAGGGGTGATTTGACAAATTTCAATAAAGCAAGACCCACTATGGAGCATTTTGGTCATGAAAACGAAACCACCAATACTGCTTGTGAGAACGAGGATGCCACTATGCAAGACGATTTATGGGGGTACttagaggaagaaagaagataTTTAGAGGAGAGGGAAAGTCAATATGATGATATTACAAATACTAAGCCTGCAGATCTAGCCAAAGAATCTGAAGAATTACACCTACTCAAATCAATTTCCCATAAGCCAGCACTTCTGAGTAAAGAGCCAGCTATGGAAGAATCGGACATAAGGAAAAATGTCCAAATTGAGGATATGTCTAACCAAAATGGACTAGTTGCATATATAACTGAAATTGTGGATGATGTCAAGACAAACCAGGAAAGGTATGTAGATAATGAACCAAGCAAAGCAGATCTATGTGAGGAGAAACAGGAGATGATGGACAATGTCCAAATGATTGAGGAAAAGTACACAGAGGTTGAGATAAGCCAGGTTGATGAGTTTCAGGTGCCAGATAACAGTCCAACCAATCTGGAAGACAAAGTGGAATGGCAAGAAAATGTAGGTTGTATGCAATCTGAATCTGAACTGCTTTCTCCCACTTCAGAAATAGAGGCAAAAGATGTCAGAGAGGTGATTGATAACATTGTCAGTAAAATGGGAGATTGTACAGAAGGATGTGGCATAAATTCAAAGGAGGAAGACACCTACTCTGAAACCAGGGAATATCCTAAACAGCCAGATATAATGTCAGTGGCTTCAGAAACAGAGACTGAAGAGGCACACCACCCAAATAATGGCACTATCCAAACAGAAGAGAAGAATGCAATACACAAAGAGGCATCCGACTTTAGTGTAGATGAAGCTGATCCACacagtaatgataataatggcCTAAAGGACGATATGACTAACAATGACCGTGAAGAAACAATGTGTAGCATATCAGAATGTGAAAATCCAGCTGCTGAACAAGACCATTCTTCAGTGTCTGATCAAGAGGATGAACACTCTGACCACTACAAGTCAGCAACTTGCACATGGCAAGAATCAGAAATTCAACATGAGCTCCAGAAATCAGAGGAGGAAATTGTCACTGAGAAACAGACTGATAATGCTAGTGAGAATGATGAAGAAGcagatgaggatgaagattTTGATGCAGAACCAATCTCTTCTCTCCAGCTTCATCAAGAAGGTGAATATTCCGACCACTCAGAGTCTTATAAAGGTCAGGAAGTGGTAGCTGAACTTGACCTCCAGACATTGGAGGAGAAAAGTGTTGGTAAGAATCCGACTCATCCTGCTGAGGAGAAAGATGATGAAACAGATGAACATGATGACAAGCAGAGCAATGCTTTAGATACTGACAAAGACTTAGATACTCAGTCACACCACTGCTACTTGGAAGATCCTTCAGTCAAAGACTTTCTGAGGAGGGAATCATGCaaaagtgaggaaaaacacaaagcCCAGTCAGAGGATTCTGCAGGAATAGAAGAAGCAGATGTGGATCACGATTGTCATTGTGTGCATCCTACGGTGTTCCCCCAGCAGCTGCTGGATTTTGTCAACTTAGCACTGATGTCCTCTGCTCTGATTTTCACATATGATTCAAATGGCTGTCTACGAATCGAGCCAGACAGATGCAAAAACAGAGCAATGGCTTTATGTAAAAGCAATGTAGACAATCAGTATGCTAGGAGATGTCTTCCTAGCCCCAACACATCTGACCTCTCTGATTACAGGCCTGATACATCAGACAGTGGAGGAGACCTGTCCCAGGTTTCCACAGATCTTTTAACCGAGGGTGGAGAGGATGAGGCAGAGAGGCTGTTCATTTACCAAGGCAACATGAAGCAAAGCTCTGAGAACATCAACAGAAAAGTTAAAACCCTGGATAATGGTTCAAAGATACCTCATCTTGACACAAAACAAATAGCTAACCCTAATTTAAAGAGGATCAACAGTCTTAGCTCTTTTCCTGACTCCATGGTTAACAATACTATGCAGGACCCGGTCTATCACAACTCTTCAGACTCTATTGGGAATTCTGAGCTTGCACAGTGTCTAGCCTTTGATGCAAAGGCTGACTCTGGGGAAGGAATCCTGATAGATAAGGGCAGGTGGCTTCTTAAAGAAAATCACCTCATTCGTAAATCTCCTCCTGTTCCAATGGCAATGTATGAAAATGTAGATACAACATCGGTTGACACAGGTCAAGAAAACACAAGTGAGGAAGCCCCCTACATACCTTGTGGGAGAAAACAGTCCCCAAGAGCTGTCATATCCTCTTCTGAGCTGGAAGACATGGCCAAGCCTTCCACACCCAAGTGTACATACTTCAACATGGCTCACAGTAGTGACTCTGACCCTTTCCTGGATAACCAGAGCATTACGAGTAACAAAGGAAGAGGTTTCACTCGAAAAAGCAAGGAAGTATCACCACTAGGAGAAACATCGAAAATGTTGGCAAAGAAAAATGGAAGCCTCCCCTCTTTTGCATCTGTTGAGTTCAAACTGGCCGCCGGAAAAGTCCATCCCGAGGACGGCATGGCATCTAGTGTGGTGGAGAAATCTGCCAGATCCCAGAGCTGCCAGATCCCAGAGCATGCAAGATGCAACACATCACATGAAGAAGAGTCAGTAGAGGGTCTGAGTCTTAGATGTGGACAGCATTGCCCAATACTGTAAACCGCAACTATATATGTTAGTTGCCCCTCTACATTAAGGAAATGAAATATTGTGGGAGGATTACTCTTTAATCGTAATAGAGTTTACCCCTCAACTTTGGTGCCTCTATCAATAAAAGTTAATTGATAGTACTGATAGTAAAACTTGAAAGCAATTTAAAATATTGAGTGGGATTTAGAAGGTTTTAGTCCTGACTGCTTCACCAAGCATATTGCACAACTGGTCAGACTTGAAAACCTAAACCTTTGTAAGTGCTATTTGTCTTGTGGTTTTGGAGcatattcatcatttttaaaaagaaagttcataatcattaatataatgtttaaGTCATCGAAGTTCAGATGCATTTTAAATTGGCCATATGAACAAATGGGAATGTGATAGTATTAACGTAAATCTTGCCATTAGACATAAAATAAAGGCGCACCATGGAGCAATGGGCtgctaaaaaatttttttttttgtacagtgcaaTAACTTTGTTATCTCTTTTGGTTTATTAAGCTAATCTTCCTGTTCCAAAGAGTTTTAGCTGGATAatggctttttaaaatgataatgactttatttaacatgtttaacatGTACTGTATAAGTGTCCCACGTCTTGACGATTGTCA

Function

GO: NA

KEGG:

id description
K19538 RP1; retinitis pigmentosa 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303845.1 True 6854 mRNA 0.42 3 22653613 22662482

Neighbor

gene id symbol gene type direction distance location
ctnnd2b ctnnd2,ctnnd2b,LOC107746909,LOC107686039 coding downstream 26590 22545958 ~ 22627023 (-)
puf60b puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 coding downstream 171469 22470219 ~ 22482144 (-)
scrib scrib coding downstream 185569 22377687 ~ 22468044 (-)
rgs9bp LOC108268154,LOC103039154 coding downstream 292460 22358195 ~ 22361153 (-)
mcur1 LOC108268156,LOC108440645 coding downstream 299036 22345935 ~ 22354577 (-)
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding upstream 16707 22679189 ~ 22701151 (-)
emilin2a LOC108268130 coding upstream 175545 22838027 ~ 22851158 (-)
adcyap1b LOC100304507 coding upstream 324179 22986661 ~ 22990616 (-)
clul1 clul1 coding upstream 378626 23041108 ~ 23050113 (-)
mrc1b LOC108268341 coding upstream 487644 23150126 ~ 23174379 (-)
G69183 NA non-coding downstream 1167 22649939 ~ 22652446 (-)
G69136 march6,LOC107664076,LOC107732575 non-coding downstream 134347 22515704 ~ 22519266 (-)
G69139 NA non-coding downstream 141303 22505790 ~ 22512310 (-)
G69131 NA non-coding downstream 194125 22453222 ~ 22459488 (-)
G69128 NA non-coding downstream 200916 22409603 ~ 22452697 (-)
G69203 NA non-coding upstream 14894 22677376 ~ 22677918 (-)
G69233 NA non-coding upstream 108904 22771386 ~ 22772012 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding upstream 140904 22803386 ~ 22805908 (-)
G69254 NA non-coding upstream 146424 22808906 ~ 22809249 (-)
G69320 NA non-coding upstream 392032 23054514 ~ 23055383 (-)
LOC113540019 LOC108268143 other downstream 17525 22629615 ~ 22636088 (-)
G68760 NA other downstream 718444 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1282603 21354619 ~ 21371010 (-)
G68462 NA other downstream 1324363 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1339716 21304692 ~ 21313897 (-)
lrrcc1 lrrcc1 other upstream 629566 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 668534 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 817483 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 830897 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 832553 23495035 ~ 23495897 (-)

Expression


Co-expression Network