LOC113540008


Basic Information

Item Value
gene id LOC113540008
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23409414 ~ 23418890 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303846.1
ATGACAGATGGTGTGGGTGTATCTGCTGATGCAGTTTCCACAGAGCTTTTTACACAACTTACAGTTGCCATGCATCTcatattgcattttatattgCTGATTTCCCTAAACTGTGCAGTGGACGGTGCTGTGGAGCTGCATCAGAAGCTCTTAAATATTAAACCTGACACCAAGATAGAATGTACCTTTCCTTCAGACTGTTATTATTACATTCACTGGTATCAGAAGAAAGACGGCAAACCTTTCAAGAGAGTTCAGTATGTGGAGATCAGTAATGCACAACGCAGAAATGACCATGGCTTTGGGTTCTTACAATCAGAGAAGCCAGCAAGCAATAAATTTGTTCTGGTAATCCCCAATGTAAAGCCAGAGCATTCAGCAACATATTATTGTGCCTGCTGGACAAAGATCTTACACTATGTCTGTGAAGTCATTTTTGTCATTGGACATTTTGCTGTGGGAAGCTGGTGGAGCAACACTTATTCTAAGGTCTTCGGCTCAGGCACAAGACTTTATATAACAGGCACTGGGAATGACGTGGTAATAGAGCCACAAGTGTCCGTGTATCCAGCATCCAAGCCTCAATCAAATGGAAAGCGTGTGTTGCTGTGCCAGGTGAGAGGCATGTTCCTGGATCTGTTGAGAGTCACGTGGCAAGCAGAAGATCAGCGTGGAAGTAAAGTGGAGCTGAAAGATGATGAGCAGCTGGAGCAGAGAGACAAGGGTCAAGTTTACATAACCAGCATGCTCATCGTAGACCAACACAAAGTCACGAACAATAAATTCACCTGCTCTGTTCAACACGACAGCCGCGTTAAAGACAAGAAAGTTGTCATTCCAAGAGATGATGAACTCCTTACAGAGGAAGACAATCCTGAGATTGAGTCAAGCACTGTTATGGTCTGCCCAACTCCGAAAGAAGTAGAAGTAGAAGAGAGGGAAGAGGAAGTTGAGATGTctgataaagaaataaaacaagATGTGTTTGAGCTCAGCTGCAGTCTGCATCTGTTCAGAGTGACGTATGTGATACTGCTGGTGAAAAATGTGCTGTATTTCTGCACCGCCTCTGTCTTACTGTGCAAGAAAAACGCAAAGGTTAAGTCCTGATCAGTCCATCAACCAAACAACATGACTCAACACACCACCACAAATACACTGGCAGCCTAAAGTTTTTGAACCCCATACTTTAATATTACTTTAACATTTTCCCCTGCTACTTGCTGCACCATTATGTTGTCCtttctgatattttatatatagattttcatattttcaaaatatttcaaaagatAAATCTGATTTAGTTGTTTAAACCTACTGTGACTATATATTTATCGATGCTACTATCTTTTGAGCATTGCTTTGTATTTCATTGTTACATTAGTCATACAGCATCCAATGATTTGCATTTATGCTTAAATTCTTAGTCTTAGgaaccctattttttttattatttatttatatttccaaacattagttttccagcacaaaattaaatgttacagaaaagtacataaaatagtaaagaa

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303846.1 True 1532 mRNA 0.39 7 23409414 23418890

Neighbor

gene id symbol gene type direction distance location
nol7 NA coding downstream 26526 23376456 ~ 23382888 (-)
and2 LOC108267411 coding downstream 86803 23318535 ~ 23322611 (-)
e2f5 LOC108268108,LOC108437220 coding downstream 117416 23285036 ~ 23291998 (-)
si:ch211-106h4.9 LOC108267629 coding downstream 146117 23230050 ~ 23263297 (-)
mrc1b LOC108268341 coding downstream 235035 23150126 ~ 23174379 (-)
LOC117597115 NA coding upstream 11410 23430300 ~ 23442743 (-)
LOC113540011 NA coding upstream 27915 23446805 ~ 23463725 (-)
LOC113540113 LOC108267226 coding upstream 47527 23466417 ~ 23505181 (-)
LOC113540016 NA coding upstream 118538 23537428 ~ 23544732 (-)
amph amph coding upstream 128280 23547170 ~ 23583496 (-)
G69551 NA non-coding downstream 11451 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 130632 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 135800 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 354031 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 600165 22808906 ~ 22809249 (-)
LOC113540115 NA non-coding upstream 34343 23453233 ~ 23454221 (-)
G69649 NA non-coding upstream 175441 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 232161 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 503216 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 512443 23931333 ~ 23932235 (-)
retreg1 fam134b other downstream 62841 23331016 ~ 23346573 (-)
lrrcc1 lrrcc1 other downstream 102480 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 773326 22629615 ~ 22636088 (-)
G68760 NA other downstream 1474245 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 2038404 21354619 ~ 21371010 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 61075 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 74489 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 76145 23495035 ~ 23495897 (-)
LOC117597075 LOC108267226,LOC108267227 other upstream 77067 23495957 ~ 23497021 (-)
LOC113540012 NA other upstream 94566 23513456 ~ 23514039 (-)

Expression


Co-expression Network