LOC117597115


Basic Information

Item Value
gene id LOC117597115
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23430300 ~ 23442743 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303847.1
ATGGGAATGGTCAGAGGAGAAATGGGCCGTGCAACTTCACCTGTTGCTATCAAGGGAAGCCCAGCTTGCCACCCAGCTTGCCTTCCAGTAGCTGCCATTACAGAGAGCAGTATTACAGTGGAGAGGACTGCAAATGATAAGTTTGTTTTGATAATCCCCAATTTGAATACAGAGCATTCAGCAACATATTACTTTGTTTGTTGGGTGTCTGTGGGATTGAGGAAAGTCTTCGGTTCAGGCACAAAACTTTATGTGACAGACACTGGGAAGGACCACGTTAAAAAACCTCAAGTGTCCGTGTATCCAGTATCCAGGCCTCAATCAAATGGAAAGCATGTGTTGCTGTGCCAGGCGAGAGGCATGTTCCCAGACCTGGTGCGATTCACGTGGCAATCAGAAGATCAGAGTAGGAGAAAAGTGGAGCTGAAAGATGATGAGCAGCTGGAGCAGAGAGATGAGGATCAGGAAGTCAGAATAACCAGCATGCTCATCGTGGACCAACACAAAGCCATGAACAATAATTTCACCTGCTCTGTTCAACACGACAGCCGCTTTGATGACCAGATTGTCATCATTCCAAGAGTCAAACACAATACTATGACAAAAACCTGTTCAAAGgtagaagaagaggaagaagaagaattcaTGACTTTTGGTTTGTTTGAGCTCAGCCGCAGTCTGCATCTGTTCAGTGTGACATATGTGATACTGCTGGTGAAaaatgtgctgtatttttgcACCGTCTCCGTCTTACTGTACAAGAgaaatacagcattttaatcCTGATCAGTCCATCAACCAAACAACACACCACCACAAATACACTGGCAGTCAAGTGTTTTTAACACTGTATATTGCACCACCGTGATGCCCTgcctaatattttatataaaggttttccaggttttttttttcttttgagtatACACATGGTATCTTTTAAACTTCATGTATCTATATACTTATCTATGCTATTATCTTTTGAgtatttctttgtatttctttttttacattaggcatatattatattatggtGATATTATGGTGATAACTTcatatttgcatttacatttgaaCATCTAGCATAGTTCATTTTATTGAAGATCATAGAATTTATTTTGTGAATTTCATTACTTCTGCCCATTCTAGCAATTCTTTTTCTTGCTATTATTTATGTCACGCCTCTATTTATGTATTCTCATACATTAAGTAAATTCTTATATAGAACTGTTTTTTCTAAAGCAAGCATAGCCTCAACAGCCCTCTTTTTCATGGTCAGGTCTGGAGTGTTTTCCGAATGCAATAAAGCACAAAGATCTCTGTAA

Function

GO:

id name namespace
GO:0009615 response to virus biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303847.1 True 1325 mRNA 0.39 6 23430300 23442743

Neighbor

gene id symbol gene type direction distance location
LOC113540008 NA coding downstream 11410 23409414 ~ 23418890 (-)
nol7 NA coding downstream 47412 23376456 ~ 23382888 (-)
and2 LOC108267411 coding downstream 107689 23318535 ~ 23322611 (-)
e2f5 LOC108268108,LOC108437220 coding downstream 138302 23285036 ~ 23291998 (-)
si:ch211-106h4.9 LOC108267629 coding downstream 167003 23230050 ~ 23263297 (-)
LOC113540011 NA coding upstream 4062 23446805 ~ 23463725 (-)
LOC113540113 LOC108267226 coding upstream 23674 23466417 ~ 23505181 (-)
LOC113540016 NA coding upstream 94685 23537428 ~ 23544732 (-)
amph amph coding upstream 104427 23547170 ~ 23583496 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding upstream 315641 23758384 ~ 23782113 (-)
G69551 NA non-coding downstream 32337 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 151518 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 156686 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 374917 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 621051 22808906 ~ 22809249 (-)
LOC113540115 NA non-coding upstream 10490 23453233 ~ 23454221 (-)
G69649 NA non-coding upstream 151588 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 208308 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 479363 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 488590 23931333 ~ 23932235 (-)
retreg1 fam134b other downstream 83727 23331016 ~ 23346573 (-)
lrrcc1 lrrcc1 other downstream 123366 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 794212 22629615 ~ 22636088 (-)
G68760 NA other downstream 1495131 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 2059290 21354619 ~ 21371010 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 37222 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 50636 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 52292 23495035 ~ 23495897 (-)
LOC117597075 LOC108267226,LOC108267227 other upstream 53214 23495957 ~ 23497021 (-)
LOC113540012 NA other upstream 70713 23513456 ~ 23514039 (-)

Expression


Co-expression Network