e2f5 (LOC108268108,LOC108437220)


Basic Information

Item Value
gene id e2f5
gene name LOC108268108,LOC108437220
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23285036 ~ 23291998 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304030.1
GTAACCTAACGTCATTTCCgttcatttaaaaatccagCTCTCTGGTGTTACTCTGAGGTAAAAGCGGGGATAAAACATGAATgtgagtttttttccccacctcaGCTGTTACAGAGGTAGTTGTGTGTCATAGATAAGTGTTTCCTCTGAGTGAAGCTtgaccggtgtgtgtgtgtgtgagagtgtgttttgaGGACGGAGCGTGTTGTGTAGTATGGTACTATGGCTGAGTCGAGCAGCTCGAGCGTTTCGCACGCGGTTCCGAACGGGTCCAGTCGGCACGAGAAGAGTTTGGGACTCCTCGCCATCAAATTCGTCACACTGCTTCAAGAGACCAAAGACGGCATCCTCGATTTAAAAGTgGCTGCGGAGTGCCTGGCCGTCAGACAGAAGAGAAGGATCTACGACATCACGAATGTCCTCGAAGGGATCGGGCTCATCgagaaaaagactaaaaacaCCATCCAATGGAAGGGAGAGAGTTCAGGCTGCCAGCCTCAGGAGATCCTAGAGCAGGTGGAACTTCTGAAAGCTCAGATAGCTGAGCTGGAGAGGCAAGAAAGAGAGCTGGATATGCAGAAAGCATGTCTGCAGCAAAGCATCAAACACCTACAGGAAGACCCCAACAGCAGCAGATATAATTATGTGACTCATGAGGACATATGTGACGTGTTCAGCGGAGACACGCTCCTGGCAGTAATGGCACCTGCAGGGACGCAGCTGGAAGTCCCTGTGCCAGAAGTGTCTCAGAATGGCCAGAAGAGATACCAGGTGAATCTGCGGAGCCACTCGACTCCCATCCAGGTGCTGCTGATCAACAGAGAGACTTGTGGATCCAGACCTGTTGTCTTCTCCGTGCCGCCCCCGGATGATATTTGTGCCATGCCCACTCCGCCCAGCACACCTGCCAGCCTGCAGAAGTACCCTGTCACTTCAGAGTCCTGCAGTTTGGAGCACAGCCAGCTCAAGAGCCCAGTGCCTGAGCACCAGCTCACTCCCTTGTCTACTCCACCTGATGTTCATATGGAGTGCCACTCTGAATCCCCTGGCAGTCAGTGCTTGTTGATGCAGCCCCTTGGTGAACCAGAGGCTTCAGCGCAGCCTCATGGAGATCTGGGAGGACAGGATATGCAGTCCATGCTGGATGTGGGAAATCTGCTCCGACTCAACACTGTGGACCAAATGAAGGAGGAAAGAGAGGGTGTTGCTGATCTCATTGATGAACTCATGTCATCTGATGtCTTCCCCCTGTTGCGCCTCTCGCCCAACCACAGTGTGGATTACAGTTTCAACCTCGATGACAACGAGGGAGTGtgtgacctgtttgatgtccAGATTCTGAATTATTAAGAAAAGCCAAATTCTTCTGTGGACTTTGGCACAATTGTCTTCCCCTCCATGGTAACACTCCAGAGCATTGCCACTAATAAACGCCAACAACCACATTCAAAACAATCACTCTGTGCtctccacacactgcaccttGGCCtgaattcatattaatattattcatgtCTCC
>XM_034304031.1
GATGAAGCCTGCTGGTTGCTAAGGTAACCGTAACCTAACGTCATTTCCgttcatttaaaaatccagCTCTCTGGTGTTACTCTGAGGTAAAAGCGGGGATAAAACATGAATtgtgttttgaGGACGGAGCGTGTTGTGTAGTATGGTACTATGGCTGAGTCGAGCAGCTCGAGCGTTTCGCACGCGGTTCCGAACGGGTCCAGTCGGCACGAGAAGAGTTTGGGACTCCTCGCCATCAAATTCGTCACACTGCTTCAAGAGACCAAAGACGGCATCCTCGATTTAAAAGTgGCTGCGGAGTGCCTGGCCGTCAGACAGAAGAGAAGGATCTACGACATCACGAATGTCCTCGAAGGGATCGGGCTCATCgagaaaaagactaaaaacaCCATCCAATGGAAGGGAGAGAGTTCAGGCTGCCAGCCTCAGGAGATCCTAGAGCAGGTGGAACTTCTGAAAGCTCAGATAGCTGAGCTGGAGAGGCAAGAAAGAGAGCTGGATATGCAGAAAGCATGTCTGCAGCAAAGCATCAAACACCTACAGGAAGACCCCAACAGCAGCAGATATAATTATGTGACTCATGAGGACATATGTGACGTGTTCAGCGGAGACACGCTCCTGGCAGTAATGGCACCTGCAGGGACGCAGCTGGAAGTCCCTGTGCCAGAAGTGTCTCAGAATGGCCAGAAGAGATACCAGGTGAATCTGCGGAGCCACTCGACTCCCATCCAGGTGCTGCTGATCAACAGAGAGACTTGTGGATCCAGACCTGTTGTCTTCTCCGTGCCGCCCCCGGATGATATTTGTGCCATGCCCACTCCGCCCAGCACACCTGCCAGCCTGCAGAAGTACCCTGTCACTTCAGAGTCCTGCAGTTTGGAGCACAGCCAGCTCAAGAGCCCAGTGCCTGAGCACCAGCTCACTCCCTTGTCTACTCCACCTGATGTTCATATGGAGTGCCACTCTGAATCCCCTGGCAGTCAGTGCTTGTTGATGCAGCCCCTTGGTGAACCAGAGGCTTCAGCGCAGCCTCATGGAGATCTGGGAGGACAGGATATGCAGTCCATGCTGGATGTGGGAAATCTGCTCCGACTCAACACTGTGGACCAAATGAAGGAGGAAAGAGAGGGTGTTGCTGATCTCATTGATGAACTCATGTCATCTGATGtCTTCCCCCTGTTGCGCCTCTCGCCCAACCACAGTGTGGATTACAGTTTCAACCTCGATGACAACGAGGGAGTGtgtgacctgtttgatgtccAGATTCTGAATTATTAAGAAAAGCCAAATTCTTCTGTGGACTTTGGCACAATTGTCTTCCCCTCCATGGTAACACTCCAGAGCATTGCCACTAATAAACGCCAACAACCACATTCAAAACAATCACTCTGTGCtctccacacactgcaccttGGCCtgaattcatattaatattattcatgtCTCC
>XM_034304032.1
ACCGTAACCTAACGTCATTTCCgttcatttaaaaatccagCTCTCTGGTGTTACTCTGAGGTAAAAGCGGGGATAAAACATGAATtgtgagagtgtgttttgaGGACGGAGCGTGTTGTGTAGTATGGTACTATGGCTGAGTCGAGCAGCTCGAGCGTTTCGCACGCGGTTCCGAACGGGTCCAGTCGGCACGAGAAGAGTTTGGGACTCCTCGCCATCAAATTCGTCACACTGCTTCAAGAGACCAAAGACGGCATCCTCGATTTAAAAGTgGCTGCGGAGTGCCTGGCCGTCAGACAGAAGAGAAGGATCTACGACATCACGAATGTCCTCGAAGGGATCGGGCTCATCgagaaaaagactaaaaacaCCATCCAATGGAAGGGAGAGAGTTCAGGCTGCCAGCCTCAGGAGATCCTAGAGCAGGTGGAACTTCTGAAAGCTCAGATAGCTGAGCTGGAGAGGCAAGAAAGAGAGCTGGATATGCAGAAAGCATGTCTGCAGCAAAGCATCAAACACCTACAGGAAGACCCCAACAGCAGCAGATATAATTATGTGACTCATGAGGACATATGTGACGTGTTCAGCGGAGACACGCTCCTGGCAGTAATGGCACCTGCAGGGACGCAGCTGGAAGTCCCTGTGCCAGAAGTGTCTCAGAATGGCCAGAAGAGATACCAGGTGAATCTGCGGAGCCACTCGACTCCCATCCAGGTGCTGCTGATCAACAGAGAGACTTGTGGATCCAGACCTGTTGTCTTCTCCGTGCCGCCCCCGGATGATATTTGTGCCATGCCCACTCCGCCCAGCACACCTGCCAGCCTGCAGAAGTACCCTGTCACTTCAGAGTCCTGCAGTTTGGAGCACAGCCAGCTCAAGAGCCCAGTGCCTGAGCACCAGCTCACTCCCTTGTCTACTCCACCTGATGTTCATATGGAGTGCCACTCTGAATCCCCTGGCAGTCAGTGCTTGTTGATGCAGCCCCTTGGTGAACCAGAGGCTTCAGCGCAGCCTCATGGAGATCTGGGAGGACAGGATATGCAGTCCATGCTGGATGTGGGAAATCTGCTCCGACTCAACACTGTGGACCAAATGAAGGAGGAAAGAGAGGGTGTTGCTGATCTCATTGATGAACTCATGTCATCTGATGtCTTCCCCCTGTTGCGCCTCTCGCCCAACCACAGTGTGGATTACAGTTTCAACCTCGATGACAACGAGGGAGTGtgtgacctgtttgatgtccAGATTCTGAATTATTAAGAAAAGCCAAATTCTTCTGTGGACTTTGGCACAATTGTCTTCCCCTCCATGGTAACACTCCAGAGCATTGCCACTAATAAACGCCAACAACCACATTCAAAACAATCACTCTGTGCtctccacacactgcaccttGGCCtgaattcatattaatattattcatgtCTCC

Function

NR:

description
transcription factor E2F5-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304030.1 True 1519 mRNA 0.51 8 23285036 23291969
XM_034304031.1 False 1447 mRNA 0.51 9 23285036 23291998
XM_034304032.1 False 1429 mRNA 0.51 9 23285036 23291972

Neighbor

gene id symbol gene type direction distance location
si:ch211-106h4.9 LOC108267629 coding downstream 21739 23230050 ~ 23263297 (-)
mrc1b LOC108268341 coding downstream 110657 23150126 ~ 23174379 (-)
clul1 clul1 coding downstream 234923 23041108 ~ 23050113 (-)
adcyap1b LOC100304507 coding downstream 294420 22986661 ~ 22990616 (-)
emilin2a LOC108268130 coding downstream 433878 22838027 ~ 22851158 (-)
and2 LOC108267411 coding upstream 26537 23318535 ~ 23322611 (-)
nol7 NA coding upstream 84458 23376456 ~ 23382888 (-)
LOC113540008 NA coding upstream 117416 23409414 ~ 23418890 (-)
LOC117597115 NA coding upstream 138302 23430300 ~ 23442743 (-)
LOC113540011 NA coding upstream 154807 23446805 ~ 23463725 (-)
G69503 NA non-coding downstream 6254 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 11422 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 229653 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 475787 22808906 ~ 22809249 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding downstream 479128 22803386 ~ 22805908 (-)
G69551 NA non-coding upstream 104666 23396664 ~ 23397963 (-)
LOC113540115 NA non-coding upstream 161235 23453233 ~ 23454221 (-)
G69649 NA non-coding upstream 302333 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 359053 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 630108 23922106 ~ 23922538 (-)
LOC113540019 LOC108268143 other downstream 648948 22629615 ~ 22636088 (-)
G68760 NA other downstream 1349867 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1914026 21354619 ~ 21371010 (-)
G68462 NA other downstream 1955786 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1971139 21304692 ~ 21313897 (-)
lrrcc1 lrrcc1 other upstream 50 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 39018 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 187967 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 201381 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 203037 23495035 ~ 23495897 (-)

Expression


Co-expression Network