scp2a (scp2,scp2a)


Basic Information

Item Value
gene id scp2a
gene name scp2,scp2a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28668979 ~ 28680704 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304106.1
AATCGAATCTTGGGAATCGACTCCCAGCGCCGTGGATGTTGTGGAGTCGGTTTGTTGCTGTCACCTTTAGCAGGAGTTTCTCAGTCAAGTGCACTTTCGCAAAATGGCTCCCGCTAAGAACAGAGTGTTTGTTGTTGGGGTGGGGATGACGAAGTTTGATAAACCAGGGGCAAGAGATGGCGATTATCCGGAAATGGCCAAAGAAGCCGGAGAGAAAGCGTTGGCTGATGCAGGAGTACCGTACTCTGCTATCGAGCAGGCCTGTGTGGGTTATGTTTACGGCGACTCTACGTGCGGACAGCGTGCTATATACCACAGCCTGGGTCTGTCGGGCATCCCTATAATCAACGTCAATAACAACTGTTCCACGGGTTCCACGGCGCTCTTCATGGCCAGGCAACTCGTCCAGGGAGGTTTGGCTGATTGTGTGCTCGCTTTGGGTTTCGAGAAGATGGAAAGAGGCTCCTTGTCCTCTAAGtacaTGGACAGAACCAACCCTATGGATAAACACATGGAGGTGATGATCAACCGATACGGCATGGCTGCAGCTCCGGCCGCGCCGCAGATGTTCGGCAACGCTGGGAGAGAACACATGGAGAAGTATGGAACCAAGCCAGAACACTTTGCCAAAATTGCCTGGAAGAATCACAAGCACTCGACCAACAACCcATATTCTCAGTTCCAGGACGAGTACAGTCTGGAGCAGGTGACTAAATCACGCAAGGTCTTTGAGTTCCTCACACTTCTTCAGTGCTGcccTACGTCTGATGGAGCCGGAGCAGCAGTGCTAGCCAGCGAGGGCTTTGTGAGGAAGCACGGTCTGGAGGCCAAAGCTGTGGAGATCATCGCTCAGGAGATGGTCACTGATCTCTCTACAACATTCGAGGAGAACAGCTGCATCAAGATGGTCGGCTACGACATGACGCGCCTTGCTGCTAAAAAGTGCTTCGAGTCGGCAGGCCTGAATCCCGCAGACGTTGGTGTCATCGAGCTGCATGACTGTTTCTCGGCCAACGAGCTCATCACGTATGAAGCGCTCGGTCTTTGTCCTGAAGGTAAAGCCGGAGAGCTGATAGACAGAGGAGACAACACGTACGGGGGCAAGTGGGTGGTTAACCCGAGCGGAGGGCTCATATCGAAGGGACACCCGCTTGGAGCTACAGGTCTGGCCCAGTGTGCAGAGCTGTGCTGGCAGTTAAGAGGCGAAGCGGGGAAAAGGCAGGTCCCGGGGGCGAAGGTTGCTCTGCAGCACAACATTGGCCTCGGTGGAGCCGTAGTGGTCACACTATACAGGATGGGATTCCCTCAAGAAGCAAGgTCTCAGATCGCTGCAGTTCCAACCAGCGCTGTCGCCGGCCTGGAGGGCTTCAAATCTCACgcagtttttaaagaaatcgAGAAGAGACTGCAGGAGGAAGGAGAAGCATACGTCAAAAAAATCGGTGGCGTTTTTGCATTTAAAGTGAAGGACGGCCCGGATGGAAAGGAAGCTCTGTGGGTCGTGGATGTGAAGAACGGGAAAGGCTCGGTGAACAACGACGCAGGAAAAAAATCGGACTGCACGATCACGATGTCCGACGCTGATCTCATCGAACTGATGACTGGGAAACTGAATGCACAAACTGCCTTTTTCCAAGGCAAGCTAAAGATTACTGGGAATATGGGAATGGCGATGAAGCTGCAGAGCCTCCAGCTGACGCCAGGCAAAGCCAAACTGTGAAGAACTCAGACTAAACTTCCGAGACCTAAGTGTGGAATCCGTGGCCGTGACATTGGGCGTGcgatatattttatacatatatacatatatatatatatatatatatatatatatatatatatatataatcacaaaTTCAACAGGTATTATAGCGGGCACTTCAAATTAACATTACTACCTCTTGCAACAATATATAATGAAATCCTGTATGAGTTCTGCTGAGATTCAGAACCTGCACAGGTTGAGCTGGTGAATCATATTCTTTAACAgaatataacaataacaatataaaaaacaCATCGGAATTCTAAATAAGCATTCAGGAGCTACGTTAAAGTACAAACGAATAGCTCACGTGGCTTGGACGATGGTCTCACGATGGAtttctttacttctttattACATTATGGACTTGCACTACACTACATAATGTGCCTCTAATACAGAGAATAATCATTACATTTAATCTGACTTGAAGAGAAACTTGATCATGAAACGTATCCTAGTGTAGAAAGATGAATCGGAGATCGTGAACTAGTACGCAGGGTCAAGATCACCCGTAAATTGTTAGCTAAATGGGTAAAATATTAGCTGCCCATGGACGTGAGACCTCTTCATTGCACTGTTAATTGTATATGCAGATTGTAGATTATGAAACgctaatttttaataaagacgTCTTCTAACAAAA

Function

symbol description
scp2a Predicted to enable lipid binding activity; propanoyl-CoA C-acyltransferase activity; and propionyl-CoA C2-trimethyltridecanoyltransferase activity. Predicted to be involved in positive regulation of intracellular cholesterol transport. Predicted to act upstream of or within lipid transport. Predicted to be located in mitochondrion and peroxisome. Is expressed in intestinal bulb; lens; liver; and solid lens vesicle. Orthologous to human SCP2 (sterol carrier protein 2).
scp2 Enables several functions, including cholesterol binding activity; lipid transfer activity; and long-chain fatty acyl-CoA binding activity. Involved in several processes, including inositol trisphosphate biosynthetic process; lipid transport; and progesterone biosynthetic process. Located in nucleoplasm and peroxisome. Part of protein-containing complex. Biomarker of Zellweger syndrome.

NR:

description
non-specific lipid-transfer protein

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0032934 sterol binding molecular_function

KEGG:

id description
K08764 SCP2, SCPX; sterol carrier protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304106.1 True 2411 mRNA 0.48 16 28668979 28680704

Neighbor

gene id symbol gene type direction distance location
dcaf8 dcaf8 coding downstream 26584 28632754 ~ 28642395 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding downstream 40836 28619816 ~ 28628143 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding downstream 49867 28611191 ~ 28619112 (-)
lmbr1 lmbr1 coding downstream 63736 28574908 ~ 28605243 (-)
shha shh coding downstream 177132 28476431 ~ 28491847 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 1768 28682472 ~ 28685576 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding upstream 5852 28686556 ~ 28690012 (-)
zte38 LOC108267617,LOC108430736 coding upstream 18965 28699669 ~ 28706523 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding upstream 27325 28708029 ~ 28711708 (-)
si:ch73-182a11.2 LOC108268045 coding upstream 42146 28722850 ~ 28736753 (-)
G72796 NA non-coding downstream 336 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 197208 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 285519 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 289847 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 524113 28081544 ~ 28144866 (-)
LOC117597077 NA non-coding upstream 32330 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 102219 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 151680 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 211312 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 259958 28940662 ~ 29029191 (-)
LOC113540437 fam159a other downstream 16554 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 432174 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 432712 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 443376 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 627194 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 106910 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 192874 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 467934 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 883517 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 1043884 29724588 ~ 29730857 (-)

Expression


Co-expression Network