ro60 (trove2)


Basic Information

Item Value
gene id ro60
gene name trove2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28276696 ~ 28286658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304138.1
ACGAGGACAGGATACGACACTTTGGAGTCGACTCTGAACTCCTAGTGCTTTGGTTCGAAGAATCGACTCTTCCTAGGATCCCTACTTCTTCCAGACTTTGGCTAACGACCTCGGAGGAAGCACCGCTATGGATTCGTCATCTCTACCAgagcaggaaacaggaaactgCACGAGTGAAACAGGAAGCGTGCCAGCCGTGACGGAGGAAGTTCGCCTGCGCCGCTTCCTCTGCTACGGCTCAGAGAGCGCCACCTACAGAGCACGCGAGCAGAGGAACCTGTGCCTTGAGCGGGCCTCGTCCGTAACTGAGCTGCTCGCGGCCGGCCGAGGCGGCGAGGCGGTGCAGGAGGTGCGGAGCATGAGTCTGAGGGGCGGAGTCAGAAGCCCAGGCCCCGCCCTGTTCGCCCTGGCCGTGATCTCGCAGCACTCGGATGTGGAGGCCAAGCGGGCGGCGTATGGCGTGCTCAAAGAGGTGTGCACTTCCCCGAGTGAGCTTTTCAGCTTTGTTCAGTATAAGAAGGAGCTGAGCGGCGCGGGGCAGCGCGGCATGTGGGGTCGAGCGCTGAGGAAAGCCGTGGCAGACTGGTACAACGGACGCGACGCTCTCAGACTGGCACACGACGTCACCAAGTGTAAAAGGAAAGGAGGCTGGTCTCATCAGGACCTGTTCCGACTGGCGCATCTGAAGCCTGCCAATGATGCCGTTGCTCTGGTGAGTAAATACGTGACTAAAGGCTGGAAGGCGGTGCAGGAGACGTacgcagacagagagaagacgGAGGATGTGATGAAGGTGTTTGTGTATCTGGAGGCCGTGGAGAAGACCAAACACTCGAGTGATGAGCTGGAGGTGGCGCATCTGGTGGAGGAACACAAACTGGAGAGAGAACATGTCCTCACTAAACACCTGAAGTCCCGAGAGGTGTGGAAAGCTCTGCTGAAGGAGATGTCCGTCTCCACACTGCTCACACATCTGGGGAAAATGACCGCGGATAAACTCCTGGGCCCGGGAAGTCCAGACACGGCGGCCGTGTGTGAGAGGATTCAGGATGAACACGCTCTACAgaagGCCAAAACTCATCCGCTTAGTGTCCTGCTGGCGGCTGAGAACTACAAGCGAGGTCACGGCAAGAGAGGGAAGTTAAAATGGAAGCCGAACAGAGACATCATTCAAGCGCTAGACTCCGCCTTCTGCAAATGTCTCTCAAACGTCGAGTCTACGGGGAAGCGCTTCGTAGTTGGAGTGGACGTGAGCTCTCGACTCGGCAGCGTTGCTCTCGGCAGCCTCGTCAGTACAGTGACCGTAGCTGCAGCCATGAGCATGgtGATCACACGGAGTGAACCGAATTCTGATGTCTTGCTGTTTTCAGAAGGAGCTGTTGTTCCCTGCTCCATCTCAGCCGATTCATCTCTCCTCCAAATAACCATGCAGTTAGTGCAGGTGTGCAGTAGCTATACAGACTGCACTCTGCCTATAACCTGGGCCTcggaaaatgacaaaatggtggACGTGTTTGTTATTTTCACCAATAATGAAACCTGGCCTGGGAGGTCAAATCCAGCGGAAACACTCAGGACATACAGACAGaaaactggCATACTTTCGAAGCTGATTGTATGCGGCATGACGACAAACAGCCTTAACGTGGTCGATCCGGACGATCAGGGCATGCTGGACATCTGCGGGTTCGACTCGCACACCGTCAGCGTCATCCGCGACTTCATCATGGACGTCATATGAGAGAGGTGCACCATGGGAAACGCACGACGCTAAAAGCAAAGCTACAccgaaaaaaaagaaagcaagaaatgaaatgttcatgtgtttctgttttttctgtaatgtCCAGCAGGCTGGATGGAGATTTTACTCggaaacacagagaacacacagcTAACTTCATTATGCCGCTTTAAAGCTATAACACTACATTcgattttataaaaaaatatatatatttttgctattGGAAAGTTCCTGGATGTAGTCATGTGACGATAGCATTTTTTGGCAGCATGCtaaagttgttaaaaaaaaatctactttttaGCTAAACTAGGAAGCTAACGACTGATTGTgcgtaaataaattaaaagtcgTTAAGATGATCATGTATTCTGAACGAGACGCTGTTGAGGttcatttaaagttaaaattgaATGATGCAGccggatttaaaaaatataataataataataataataataataacaatagtaacaataataataataatatcattactTGTGATAGTTTACACAAGTATTGAATTTTatatctgtaatttttttagtcCTTTATATAAGGCtaactagcatgtttttttttccccaaccatATGAAGAAAAACTTCTCTGAATTTAATAATCTAATAACGGAAATTTACGCAAAAAAATATTAACGTGTACATTTGCCTgctaaaacaagaaaaaaaaaattctgacagtAGTTAGCATTAAATGTTGTTTGAATTGAATGCCCTGAAATGTccactttatatttaaaaaaaattctttcgaTGATTAGTTTTTGCTGATagttattagatttttttattattattattttaacgtTACTGAATTTATTTAAGACACGTGTTTTTGAGTTTACGATATCAGTGCACTTTTTCATCTATTTCATGTGATAGGCATTTCTTGGTCGGAATGGGCGGAGCTTACATTGTGTTCAACCAGCCAATTGCAAACTTGCAATCATATGACATCactagcttttatttttagtttcttCAGATGGAAGTAGCACTTTACTGGAAAATGTTGTTTTACTTACGCGATTTAAATCTCATAATTATCAACTGAAGCAACTGtgctaacattagccagctTTGTGTTTAGTTATCGAACATTATCGTCGACTTTCTTGATATAAAGATGTTACATAGCTAGCTGTCAAATTCTCGACAAAGCTAACTAAgtagctattttttaaaattttgtgtcTCAGATTTATGGTAAATTCCTGACATTCCTGAGCTAAATTTATGCTATGATGATCAGGCATGATCAGGTTTGTGATTGCAAGTTtaacttaagctccgccccttttgaCTGCGGGAATGTCAAATGTCAGTGTGGGAACATTTACGTGTATTTACATTGATTACTATTTAGCGTTTTTATTTAGACCAAAGTTTGACATCATTAACTAATAATGAGTGAGATCTAATATAGCTGCTAATTAGCTGTTATGCTAGCAACCGTGTGCTGATCAATGGCTggaagttttctttctttctctgagtTCCGATACGGTTTTTAACCCGCTCTCAGAATCTTATGCTACCTAGCTAACTAGATAACTAGCTAAAGTGCTAATTAGCCGAGTTGTTAAGTAGCTAGTGTAAACAGAATTATCACCAATTTTGAAATTGAAATGCTCCAGTTTACACTTCTTTTAAAGTGATGTCGACGCACTCTTGTCGAGGGGAAGTTGACGAGGGTGCGTGAGTGAAGagtattggaacacagccgTTGTTAGCTACAGTAGCACTTTAGTTTCAAGACCTTTAATCTGAATCGTGAGGTTTCTGATTGTTCAAGATAATTAACACTAGAACAACGATTTCTCCGCTGAAAAGAGAAGATGGGCGTTCTGACGGACGTGTGGAGTTCATTGGTTTCATCAGAAATAAAACGTACGCACTGTGATTGCTGTAACTGTGGAGCTTTGTGCTTTGTACCTCTCCTTTAAGTCCACACTGCGTTGGCAGTGAATCACTGTAGCCCACACCGCAACGCCTGGAACTCCTACcacttaataaatta

Function

symbol description
trove2 60 kDa SS-A/Ro ribonucleoprotein

NR:

description
60 kDa SS-A/Ro ribonucleoprotein

GO: NA

KEGG:

id description
K11089 TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304138.1 True 3786 mRNA 0.44 10 28276696 28286658

Neighbor

gene id symbol gene type direction distance location
cdc73 cdc73 coding downstream 1381 28238896 ~ 28275315 (-)
LOC113540124 NA coding downstream 80639 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 105715 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 135789 28124082 ~ 28140907 (-)
ahsg2 LOC108267477 coding downstream 154593 28117092 ~ 28122103 (-)
shha shh coding upstream 189773 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 288250 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 324533 28611191 ~ 28619112 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding upstream 333158 28619816 ~ 28628143 (-)
dcaf8 dcaf8 coding upstream 346096 28632754 ~ 28642395 (-)
G72658 pfn2,pfn2l non-coding downstream 131830 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 136258 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 207419 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 208612 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 263892 28011684 ~ 28012804 (-)
G72709 NA non-coding upstream 56476 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 78999 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 111003 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 380665 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 426376 28713034 ~ 28717955 (-)
trnas-uga_2 NA other downstream 39891 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 40429 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 51093 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 234911 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 720709 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 361666 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 500956 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 586920 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 861980 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 1277563 29564221 ~ 29575727 (-)

Expression


Co-expression Network