LOC113540541


Basic Information

Item Value
gene id LOC113540541
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13902898 ~ 13911755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404036.2
GAGCACACAACTATTTTTCTTTAGATGAACAGCATATTTTCAAGGTATCTGGGATCTTGGACCGAGTGAACGGCGAGGCAACCAATCACAGTGAAGCTGTGTGTGACCCCGTcatcactaacacactgcagcaagTTAGTGGCAGCTGTGGGAAGGTTGGCTTTCAGGTGATGTCTTGAGGGCCCGAATTACCTAAATTAGCCACATTAGCTAGCGGACTGGACTTGACAAGAAGgtTTCCATGGAGCTGGAAAGATCATCTGTGCAAACAACTGGGAGGATTCTGCAGTTTACTGTACTAATGCTTGTGTTCTAACTGTTAGAACTCttgatgttattattattgaacatGTTTAGgttagaaattattttaaatgttctaGGTATTGTTATTTACTTGACTGTTAAAGTGTTCTATACTTTGTGAAAATGGAATGCATAACCTTGTGGAcatgtttctttattattttattaacatcagTGTTGATTGTTCATTGTAAACCAGCTTTACTCCCTGACACTGTTCTGGTTCTGGACCCCCTGGAGGTGGTGGCTGAAAGGAGAATGGGATCCAAATTGTTGGCCCATTATATTACATAGGTGTATCTATAAACctattctgtatttattataatgttgGTATATTTTTCCATGCACTGTATAGTGGTTTATAATGTCTCACTGTTATGGCAACCCGATTTTCCACATCAGTAAATACCTTTCTATCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404036.2 True 731 lncRNA 0.39 2 13902898 13911755

Neighbor

gene id symbol gene type direction distance location
col4a5 col4a5,LOC106608922 coding downstream 105453 13747239 ~ 13797445 (-)
usp12b LOC101154659,LOC107707922,LOC108412583,LOC106934565,LOC101071205 coding downstream 207898 13684736 ~ 13695000 (-)
cnpy4 cnpy4 coding downstream 369634 13527886 ~ 13533264 (-)
ntn5 LOC108267835 coding downstream 381372 13505741 ~ 13521526 (-)
si:ch73-335l21.4 LOC108268348 coding downstream 512933 13388333 ~ 13389965 (-)
sema4f sema4f,LOC108267878 coding upstream 928 13912683 ~ 13967911 (-)
dok1b dok1 coding upstream 106703 14018458 ~ 14033040 (-)
LOC113539907 paip2b,LOC103027680,LOC108428580,LOC107721669,LOC108426126 coding upstream 130196 14041951 ~ 14054035 (-)
cct7 cct7,LOC107697251,LOC107721663,LOC107691460,LOC107583281,LOC107744273 coding upstream 167950 14079705 ~ 14086981 (-)
plcb3 plcb3,LOC108267602,LOC108428576 coding upstream 245681 14157436 ~ 14220288 (-)
G64267 NA non-coding downstream 12681 13888688 ~ 13890217 (-)
G64261 LOC108267418 non-coding downstream 30619 13869009 ~ 13872279 (-)
G64222 NA non-coding downstream 159300 13738589 ~ 13743598 (-)
LOC117597078 NA non-coding downstream 178982 13716325 ~ 13723916 (-)
G64147 NA non-coding downstream 333301 13564633 ~ 13569597 (-)
G64294 m1ap non-coding upstream 80816 13992571 ~ 13996399 (-)
G64296 NA non-coding upstream 86980 13998735 ~ 13999683 (-)
G64305 NA non-coding upstream 104840 14016595 ~ 14016950 (-)
G64291 NA non-coding upstream 128911 14040666 ~ 14041288 (-)
G64434 NA non-coding upstream 266819 14178574 ~ 14230828 (-)
zgc:194312 LOC108267841 other downstream 462378 13436056 ~ 13440520 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other downstream 594420 13285999 ~ 13308478 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 1413336 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 1625229 12272218 ~ 12277669 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other downstream 1653144 12246962 ~ 12249754 (-)
G64436 NA other upstream 321054 14232809 ~ 14243681 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 1967716 15879471 ~ 15904355 (-)
smim20 NA other upstream 2061824 15973579 ~ 15991985 (-)
acox3 acox3 other upstream 2142773 16054528 ~ 16071692 (-)
tnfsf12 tnfsf12 other upstream 2507409 16419164 ~ 16426624 (-)

Expression


Co-expression Network