LOC113540702


Basic Information

Item Value
gene id LOC113540702
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29523394 ~ 29523466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404076.1
GTATGAAATGATGGCATACCATCTTTCGGGACTGACTATAATGGAGAGACTTTTCTCACTTTACTGATCATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404076.1 True 73 ncRNA 0.38 1 29523394 29523466

Neighbor

gene id symbol gene type direction distance location
kcnmb2 NA coding downstream 57374 29461041 ~ 29466020 (-)
mfsd8l2 LOC108267997,LOC108437504 coding downstream 70601 29442115 ~ 29452793 (-)
pcolce2a LOC108268019 coding downstream 151868 29359500 ~ 29371526 (-)
chst2a LOC108268021 coding downstream 186691 29333119 ~ 29336703 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding downstream 200477 29300306 ~ 29322917 (-)
LOC113540698 NA coding upstream 257 29523723 ~ 29523912 (-)
LOC113540697 NA coding upstream 1043 29524509 ~ 29524687 (-)
LOC113540703 NA coding upstream 1523 29524989 ~ 29525061 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 53232 29576698 ~ 29592827 (-)
LOC113539879 LOC108267234 coding upstream 106504 29629970 ~ 29666855 (-)
G73327 NA non-coding downstream 203060 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 305236 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 308343 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 327227 29128055 ~ 29196167 (-)
G73423 NA non-coding upstream 16629 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 84135 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 147721 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 187620 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 189427 29712893 ~ 29713446 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 351473 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 638429 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 731565 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 870969 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1286589 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 40755 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 201122 29724588 ~ 29730857 (-)
G73619 blvra other upstream 496040 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1218061 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1249983 30773449 ~ 30775819 (-)

Expression


Co-expression Network