LOC113540725


Basic Information

Item Value
gene id LOC113540725
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13204273 ~ 13204462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404098.1
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCtgttcttatcagtttaatatctgatacGTCTCCGACCCGGGGACCATATATTAAATTGATTTCTGGAGCAGGGAGATGGAGATGGACTTGCTCCGTCCACTCCACGCATCGACCCGGTATTGCAGTACTTCCGGGAACGGTGCACCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404098.1 True 190 ncRNA 0.49 1 13204273 13204462

Neighbor

gene id symbol gene type direction distance location
pop7 pop7,LOC100709557,LOC107659735,LOC100707405,LOC102794197 coding downstream 467755 12734646 ~ 12736518 (-)
ufsp1 ufsp1 coding downstream 491429 12710191 ~ 12712844 (-)
LOC113540289 LOC108267594 coding downstream 497229 12697759 ~ 12707044 (-)
LOC117597087 LOC108267594 coding downstream 512435 12680361 ~ 12691838 (-)
tmem102 tmem102,LOC108267795,LOC108434872,LOC107659729,LOC107750772,LOC107560290,LOC107564774 coding downstream 725309 12464516 ~ 12478964 (-)
bcl6b LOC108267673 coding upstream 12438 13216900 ~ 13223130 (-)
sst5 LOC108267674 coding upstream 38207 13242669 ~ 13243766 (-)
tm4sf5 tm4sf5,LOC108442834,LOC108410825 coding upstream 59809 13264271 ~ 13267825 (-)
si:ch73-335l21.4 LOC108268348 coding upstream 183871 13388333 ~ 13389965 (-)
ntn5 LOC108267835 coding upstream 301279 13505741 ~ 13521526 (-)
G63787 NA non-coding downstream 4364 13199019 ~ 13199909 (-)
G63789 LOC102193867,LOC104942379,LOC100699848 non-coding downstream 8392 13194062 ~ 13195881 (-)
G63817 NA non-coding downstream 87333 13116073 ~ 13116940 (-)
LOC117597210 NA non-coding downstream 253178 12941670 ~ 12951095 (-)
G63580 NA non-coding downstream 331931 12799166 ~ 12872342 (-)
LOC113540062 tmem88,LOC107719780,LOC103146602,LOC107597044,LOC107664278,LOC106935498,LOC103375639 non-coding upstream 3991 13208453 ~ 13214236 (-)
G63793 trip6 non-coding upstream 28271 13232733 ~ 13234948 (-)
LOC113540618 NA non-coding upstream 47515 13251977 ~ 13259368 (-)
G63866 slc16a13 non-coding upstream 74074 13278536 ~ 13279774 (-)
G63913 NA non-coding upstream 213850 13418312 ~ 13418530 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 714711 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 926604 12272218 ~ 12277669 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other downstream 954519 12246962 ~ 12249754 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 1237370 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 1669030 11524826 ~ 11535243 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 81537 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 231594 13436056 ~ 13440520 (-)
G64436 NA other upstream 1028347 14232809 ~ 14243681 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 2675009 15879471 ~ 15904355 (-)
smim20 NA other upstream 2769117 15973579 ~ 15991985 (-)

Expression


Co-expression Network