LOC117597081


Basic Information

Item Value
gene id LOC117597081
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23272162 ~ 23273614 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578004.1
TGTCCTGCTTGCCTTGCTGCCAAGTGTGCAAACTCCAGACCAGTGATCCacgtcactctctctctctgtgtctgtgagtgtgtgtgtgtgtgtgtgtgtttgtgggaggGAAACACGTCAAGTGACTCACATGCTTAATTGCAAGGAGGATGTATTTCAGCTGgaaaaataaacaaacgaGATCTGATAAAACATGAACATATAGCACAGACTGGGGCATTGTCAAGAGATCTGTTTACCAGGATGGACTTAAAAGGTGTCCCCCTCCTTGTGTCCCAAGTGGGATAcactccaggctccccacaaccctgtggaggataagcggtacagcaAATGGACGGATGGATATTTTATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578004.1 True 357 lncRNA 0.47 3 23272162 23273614

Neighbor

gene id symbol gene type direction distance location
si:ch211-106h4.9 LOC108267629 coding downstream 8865 23230050 ~ 23263297 (-)
mrc1b LOC108268341 coding downstream 97783 23150126 ~ 23174379 (-)
clul1 clul1 coding downstream 222049 23041108 ~ 23050113 (-)
adcyap1b LOC100304507 coding downstream 281546 22986661 ~ 22990616 (-)
emilin2a LOC108268130 coding downstream 421004 22838027 ~ 22851158 (-)
e2f5 LOC108268108,LOC108437220 coding upstream 11422 23285036 ~ 23291998 (-)
and2 LOC108267411 coding upstream 44921 23318535 ~ 23322611 (-)
nol7 NA coding upstream 102842 23376456 ~ 23382888 (-)
LOC113540008 NA coding upstream 135800 23409414 ~ 23418890 (-)
LOC117597115 NA coding upstream 156686 23430300 ~ 23442743 (-)
G69320 NA non-coding downstream 216779 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 462913 22808906 ~ 22809249 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding downstream 466254 22803386 ~ 22805908 (-)
G69233 NA non-coding downstream 500150 22771386 ~ 22772012 (-)
G69203 NA non-coding downstream 594244 22677376 ~ 22677918 (-)
G69503 NA non-coding upstream 4961 23278575 ~ 23278782 (-)
G69551 NA non-coding upstream 123050 23396664 ~ 23397963 (-)
LOC113540115 NA non-coding upstream 179619 23453233 ~ 23454221 (-)
G69649 NA non-coding upstream 320717 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 377437 23651051 ~ 23651866 (-)
LOC113540019 LOC108268143 other downstream 636074 22629615 ~ 22636088 (-)
G68760 NA other downstream 1336993 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1901152 21354619 ~ 21371010 (-)
G68462 NA other downstream 1942912 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1958265 21304692 ~ 21313897 (-)
lrrcc1 lrrcc1 other upstream 18434 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 57402 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 206351 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 219765 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 221421 23495035 ~ 23495897 (-)

Expression


Co-expression Network