G41731 (fam13a,LOC107684269,LOC107757018)


Basic Information

Item Value
gene id G41731
gene name fam13a,LOC107684269,LOC107757018
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6535704 ~ 6538550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU49367
gagaattcagtagcactgtggtataaactctTGCCTTGATGTCCTCGGGCCGGCCAGCCTCGGTGCGTTTCTCCTGCAGTTTGTTCATCACCGTCTCCAGCGTGCTCTCCACAGGTGGTTTGGGTGTCTTGGCCTCGCTGCTTTTCTTCTCCAGCTGAGAGCCGAAGCTCTTGGGTAGCGTGTTGCTGCGCTGCCTCGGCAAAGGAGCCAAATCTTCCTCTGACTTcagcaaactgtgctcCTTTAAGGTCTTTGCGAAGCTTAGCCAGCTCATTCATCCACCTCAGGACCTCGGGGTTGGCCGCTTTGTCACTGTGCGACGGCTGGAGAAGGAAAACACAGCCCATTATTGTTGTCtcagaaaacaggaaacagactCACAAGGGGCCATTTTGAAAAAGCAGTTCTAGTATCCGTTTGGATTttcctgctgctgtatcagaaaCCTTTGGAAAGTTGTGGAATTTTCTGCAATATGTGCTTTTACTAACCCTGTATTTGCGTTCTTCCTCAAACTTTTCCTCAAACTTCCGGATCTTTTTCTTGAGGTTGTGGATCTTTTTAGAGAGCTGCGTTGACGTGAGCTCCTCAGATTCATTATCACAAGAGCCGAGAGAAGAACTCCGCCGTCGGCTGAACACAAAATATTATAGAAACATAATCAGATACCTGAAACCTCATCCTCAGGTCCTTAACCTTAACAGTCACTGAACAGCAGATTATTAGTTTAATCAGGAGCTAAGGATACATTCAGCAaaccagccaaaaaaaaaaagctaaacacTTTAATCTCACCACAACTGGGGAATCTAATCTTATATCACAGACTGTTACAATCCTAATCCTGCACTCTTAAATTGATACTTCTTTTCCACTGATGAGATGTTGGTTGTTCTTCATATTAGAAAACTACTTTTCCaccaatttaataaaaacatctttaaaggattttaagttttatttctgGCACTGTGAAGAAGCCATGAGAAACTAAATGACTCCAAAGCCTTGATTGTCGGTGATTCTTGCCTTCAGACTGGCATTGattggctcagtggttaaaggtTTGGGCTACTTATTGGTAGGTTTTGAACTCAAATCCCAATATTGCCAGGCTGCCATGGTTGGGTCtgtgagcaagacccttaacccctAACTGCTCAGTTTTATCCTGTCCCAGCTGTAAGtctctttggataaaagcttcagccaaatgaataaaatgtaaatgtaaaatgcagaCTTTGGTGCTTTACCCTTTAGCCTGATTCCACTGCAAAAGAGCCAAAGTATTAAACAGTATAAAACATGCATTATTACAGTGCCTTTCTCTAGTTCTCAATTGACTTTAGTTCCAGGTTTGCTCTCACCTGATAAAAGAATGTGTGTTGGGCGGTGAGGGAGGCACCTCGGTGTCGTCCAGGTACTGCTGCGAGTTCCCGTAGGCGTAGAAGCGTGGTGAAAGCATGGGATCGGAGTCTTCCTCCAGCAGTTGACGGATCATTTTGCCCCCAGTGTGGGGCGAGAGGTGAGCTTCTTCACTGTCCATGTTGTCTCTGTGCCACGATGAGTAGGCTGGCACTGGTTCTATCAACAACACACATATAcgtttatttacatatatatctCACACACATCCAGACCAAGCAGCCTTTAGAACATCATGGTTAAACAAATAACTTTAcaggtttgttgttgtttctaacCTTCTGGACGTTGACACAGTCCCCAAACTAAAATATGGGGTTGATGGGAGAAATTCTAATCTGAGGCTTGTTAAGTTGTCCCTTAGACTGAGGAACAAAGCTTAACTCAAATATACGAATGATGTAAGagaataaaagggaaaaaagcacTGTAGAGCTGTTGCCAAGAAACAAGCATCGACAATGCCAAGACTGCAGCAAAGGACGCAAGGCCATTTAAGAGCATACGTGCATAAAACAAACACCCACGCGTGTCAGAGTGTGCATCATGCTTCAAAGCATAAgtgttttttggttgttttttttttttttttgaagagtaATATTCCCATGGATTCTTTGTTTTTGTCCCCACATATACAGTAACTGATGTCGTTTTTTCCCTGAGAGCTGTGTGAGGTacactatttatttgtttgatggTTATTGTAGTGTGACTGATTGATAAATCTAAACATGCCAAACTTCCCCTGACAAGCTCCTAAAGCAAACCAACAGTCATATTCCATTATTAGCTTAAATGTAGCTTAAAGGTCTAAATCTTTC

Function

symbol description
fam13a Is expressed in several structures, including eye; lens placode; peripheral olfactory organ; solid lens vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in chronic obstructive pulmonary disease. Orthologous to human FAM13A (family with sequence similarity 13 member A).

NR:

description
PREDICTED: protein FAM13A isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49367 True 2252 lncRNA 0.42 3 6535704 6538550

Neighbor

gene id symbol gene type direction distance location
elmod2 elmod2,LOC107594343 coding downstream 143182 6384600 ~ 6392522 (-)
znf330 znf330 coding downstream 267993 6253523 ~ 6267711 (-)
il15 NA coding downstream 292565 6229644 ~ 6243139 (-)
usp38 usp38 coding downstream 694934 5825410 ~ 5840770 (-)
hhip hhip,LOC107654904 coding downstream 1003224 5498440 ~ 5532480 (-)
herc3 herc3,LOC107684306,LOC107583224 coding upstream 11296 6549846 ~ 6583135 (-)
LOC113542150 LOC108263070 coding upstream 46235 6584785 ~ 6602144 (-)
herc5.1 NA coding upstream 66024 6604574 ~ 6620882 (-)
LOC113541261 LOC108263069 coding upstream 84919 6623469 ~ 6641622 (-)
LOC117596878 LOC108263069 coding upstream 105383 6643933 ~ 6659991 (-)
G41563 NA non-coding downstream 163838 6371655 ~ 6371866 (-)
G41491 NA non-coding downstream 233616 6295232 ~ 6302088 (-)
G41300 NA non-coding downstream 659313 5876101 ~ 5876391 (-)
G41174 NA non-coding downstream 934561 5599984 ~ 5601143 (-)
G41114 NA non-coding downstream 1254481 5277951 ~ 5281223 (-)
G41768 NA non-coding upstream 138580 6677130 ~ 6680273 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding upstream 256029 6794579 ~ 6797620 (-)
G41938 NA non-coding upstream 402690 6941240 ~ 6941458 (-)
G41944 NA non-coding upstream 473543 7012093 ~ 7012306 (-)
G42008 NA non-coding upstream 478215 7016765 ~ 7017405 (-)
gab1 gab1 other downstream 716191 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1307737 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 1629465 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 1926254 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3501151 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 622924 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 900354 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1596091 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1931436 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1931808 8470358 ~ 8470429 (-)

Expression


Co-expression Network