G57275 (syt14)


Basic Information

Item Value
gene id G57275
gene name syt14
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33257229 ~ 33257792 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67449
GTCCTCAGCAGAAGCCTCGCTGCTGTACCCGTCGTACTCGGCAGACAGGGGGCAGTATTTGTGCTGCGTCTCCCAGCTGAAGCCTTTATGATGAGGGGCTCCAGCCCCTGAGCAGCGGCCTCGGAGACCCCGCGAGCGCGTCATGGCCTCCTGATACTGACCCATCACCTCGTCATCGCTGTCTGATGACCAGGCCTGAAAATCCGCCTCTCCATAGCCCTTatctagcacacacacacacacacacacagagtaagaAACAGTAAATCTACAAATAGACAGGTTCCATTTGGTACCAAGACAGATCTCGACCTGGAACTATTTCAGCATATAAACTAAAGGATAAACA

Function

symbol description
syt14 Predicted to enable identical protein binding activity and phospholipid binding activity. Predicted to be integral component of membrane. Implicated in autosomal recessive spinocerebellar ataxia 11.

NR:

description
PREDICTED: synaptotagmin-14

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67449 True 349 lncRNA 0.53 2 33257229 33257792

Neighbor

gene id symbol gene type direction distance location
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding downstream 152986 33095656 ~ 33104243 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding downstream 388874 32865245 ~ 32868355 (-)
mtres1 c3h6orf203 coding downstream 492885 32759671 ~ 32764344 (-)
sobpa sobp,LOC107706905,LOC107588585 coding downstream 547018 32669506 ~ 32710211 (-)
arg2 arg2 coding downstream 721610 32525404 ~ 32535619 (-)
LOC113542112 NA coding upstream 29009 33286801 ~ 33293343 (-)
hif1aa hif1a coding upstream 48520 33306312 ~ 33321663 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding upstream 71213 33329005 ~ 33336795 (-)
dhrs7 dhrs7 coding upstream 99238 33357030 ~ 33361865 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding upstream 127322 33385114 ~ 33387819 (-)
G57267 NA non-coding downstream 21517 33234666 ~ 33235712 (-)
G57215 NA non-coding downstream 188544 33067534 ~ 33068685 (-)
G57169 NA non-coding downstream 456757 32799111 ~ 32800472 (-)
G57126 NA non-coding downstream 481632 32729884 ~ 32775597 (-)
G56860 NA non-coding downstream 543296 32713729 ~ 32713933 (-)
G57290 NA non-coding upstream 39027 33296819 ~ 33298313 (-)
G57292 NA non-coding upstream 45778 33303570 ~ 33305518 (-)
G57294 NA non-coding upstream 68288 33326080 ~ 33360691 (-)
G57300 NA non-coding upstream 105812 33363604 ~ 33364547 (-)
G57302 ppm1a,LOC106571506 non-coding upstream 107265 33365057 ~ 33410771 (-)
G57210 NA other downstream 157657 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 528488 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 595617 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 868085 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 902729 32346755 ~ 32354500 (-)
slc38a6 slc38a6 other upstream 79611 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 165872 33423664 ~ 33442815 (-)
G57322 NA other upstream 197430 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 222556 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 272135 33529927 ~ 33529997 (-)

Expression


Co-expression Network