hmx4 (LOC108262851)


Basic Information

Item Value
gene id hmx4
gene name LOC108262851
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7823130 ~ 7825476 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943612.2
CTATTGGCCGCTGAGCTGAGGGATTCCCGCGACCAATAGACGAAAAGGGGAAACCACGTACTTCCGGTCCGAGGAGTAACCGTCGCGCAAGACTCCGAGTTGCTAGTCGGTTGCGGAGCGATGGTGCTCGAGGGGACCGAGGTCGGGGTGTGAAGCTGCGCGGAGTCTGGGACACGCAAACCGTCTGCCTGTGAATATGAGCAAGGAAGAGCCGCCGCGTCGAGCCGCTTCCTTTAAGTTCACCATCGACAGCATTCTCAATCTGAAGTCGAGCGGACGAGGGTTTGACAGCTGTCACTCGAAGGCGACGCGCGCTCCCGTCCGCGGGGACGCGCTTCCTCTGCAGCGCGAGGACACACTTCATGATGGCGCGCGTGCAGAGGTAATCTCCGGATGCGAGGATGAAGCCTTCCAGAGCGCCGCCGGCGGAAGCGCAGACACGCACGGAAGCGCGGCGCGCGACAGCGGCACCGAGAAGAGCACGCGGACGGCGGCGAAAAAGAAAACGCGCACCATCTTCTCCAAGCGGCAGATCTTCCAGCTGGAGTCCACTTTCGACGCCAAGCGCTACCTGAGCAGCGCGGAGCGCGCGTGCCTGGCCAGCTCTCTGCAGCTCACCGAGACTCAGGTGAAAATCTGGTTCCAAAACCGGCggaataaattaaaaaggcaGCTGCTGTCGAGTGAAATGGACGGAGCGAGCGCCGAGTTCAGCGACAGCGCAAAGACAGTGGCGCTTCCGCTTTTCTATAAAGAAAGCGCTTTATTAGGaagatgtttattaccgacacCTCTGCCGCTCGTGTATCCCGGAAGCAGCGCGCCTTACTTGTGTCTCTCAAACGCCAACAAATACTTCGGGCTTTTCGAAGGAGACGTCTGACTTTCTTAAATCCACTTTTGAAAGGTCACTATATTTTTTTGTGCTTGGCAAAATGAGTGAAAACaccatgcttttattttttattttatttttttatttttttttagcataaacCTACAAGTATTAATTAgtatattaactttttttttttttttttgcagtgaaagtTGAGAGATTAGAATATCGGCTTTCAGGGACCTGTTTATTTCTATGCAAAGCTGAAAagctgatattatttatttataaactttaaCTATTTTGATATAGCCTAACATATTTTATACTCTTATGACATCATAATGCGCAGCAGCCATATCCGCGCCAGTGCCAATCATCCACAGAACATCATTACAAACGtttacactattattattattattattattattattattattattattattattattattacaacttCGCCAAAGATCCAtggctgcatgtgtgtgtgtttctgtaaccTCCTGCATATAGGCGTACATCCCAAACCAGCTCccaaatgaatgtaaatgctattaatttttgttattcgtttactgcatgtttatttttatcatcttaATTTCTCATTGGTGTAATGTGGCCAAGTAGCTTACATTTAGGCCTcttcacacctttttttttttaaattaaatttcctGTTTTACACTTACCTCTCAAGCACTTCTTTTTTTGGTCCTATATTTGTAGcacacagcaaaatccccagtgttgGCTGAATTAATATACTTACAGTGCTGACTTAACTCTCACAAGCGTTTATTTGTGCACACCTTCACTTATATAAACACTATAGGATTGAATATTCTCATAAAATagtgttcactgtgtgttaaATCAGCACTGGGGTATTTGCTATGCCTAGGTTGTATTCGAAGGCCCTCTGTGGCAGGAGATGTTGTTTGGATTGATGTGGAATCTCTTTAATCCTATTTCAGTCTGGATAATGTTGATTAAACACGTGAGTGTGCTTTACAAGAAAGCAGGCTCACAAAAAATCCACCTGAAATctggatgtttttaaattttgttcacGATAGAATGGGTTTAAAATTGAAACACTGAGACAGTCCATGTGCTAAATCCTCTCCCAAATAGTTTAAATCATCACATGTAGCATTCCAGTTCACACCGTGTCTGTAGAAGTGAACCAAGTAATAGCTATTTTACTGAAATAGTCCATGAAACatcaaataattataatgagGAAAGctgtttggtgtttggtggatGTATGGTCAgaaaatatttaagatttaagattcTTTTATTGCCATTCAGCAGTGTTGGGAGTAGTTGGGTTCAGTACAGCTCAACAAAcaa

Function

NR:

description
PREDICTED: homeobox protein HMX3-A-like

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943612.2 True 2209 mRNA 0.43 2 7823130 7825476

Neighbor

gene id symbol gene type direction distance location
zgc:153642 NA coding downstream 107229 7702652 ~ 7715901 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding downstream 177055 7630169 ~ 7646075 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding downstream 438967 7361915 ~ 7384163 (-)
LOC113542008 LOC108261848,LOC108262968 coding downstream 484699 7325374 ~ 7338431 (-)
LOC113538928 LOC108261848,LOC108262968 coding downstream 498124 7319099 ~ 7325006 (-)
hmx1 LOC108262852 coding upstream 1158 7826634 ~ 7829546 (-)
adra2c adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 coding upstream 81752 7907228 ~ 7909974 (-)
LOC117596360 NA coding upstream 228018 8053494 ~ 8069324 (-)
dok7 dok7 coding upstream 257575 8083051 ~ 8123270 (-)
htt htt,LOC107679870 coding upstream 395123 8220599 ~ 8270117 (-)
G42426 NA non-coding downstream 2269 7820650 ~ 7820861 (-)
G42401 NA non-coding downstream 128637 7693214 ~ 7694493 (-)
G42400 NA non-coding downstream 132103 7690711 ~ 7691027 (-)
G42397 htra3a,LOC108263851,LOC108434764,LOC107674193,LOC107752916,LOC107556529 non-coding downstream 135441 7687297 ~ 7687689 (-)
G42395 NA non-coding downstream 141700 7680820 ~ 7681430 (-)
LOC113544822 NA non-coding upstream 151665 7977141 ~ 7979763 (-)
G42642 NA non-coding upstream 364259 8189735 ~ 8190276 (-)
G42650 NA non-coding upstream 378721 8204197 ~ 8204405 (-)
G42665 NA non-coding upstream 473704 8299180 ~ 8299444 (-)
G42671 NA non-coding upstream 554864 8380340 ~ 8380715 (-)
maml3 maml3 other downstream 233467 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 618431 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 2003617 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2595163 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2916891 4893902 ~ 4906239 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 309165 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 644510 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 644882 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 657827 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 929438 8754914 ~ 8783798 (-)

Expression


Co-expression Network