telo2 (telo2)


Basic Information

Item Value
gene id telo2
gene name telo2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30988123 ~ 31014649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU20248
tctctctctctctctctctctctctctctctctctctctctctctctctctctgcaggatgGTGAGGAGAGGTGTGTTGTTctcagtgtgtgctgtgtttttgagCATGCCCAGTGAAAATCTGCTGCTGGAACTCAGTGATGATCTAGTAGAGACCAGGTCATGGCTcgcagatgtagcAGAGACTGATCCTGATGCAGACTGCCGGAGTTTGGCTGTACAGAGTTTAGTGCTGCTGgaaaaaaacctcaaaactCACCTGCAAAACCCCATGCTGGAaagctgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtgtgtgtgtatgtgtgtgtgtatatgtgtgtgtgagagagagagtgtgtctaGCCTTTAATGTGTTAAACATGAGGACTGCAGAAGAAACCAACACTCACCTAAAAAAAACTGGAGCtatgaatgtgtgagagagataaacagtga
>TU20249
TCTCCGCCCAGGAGCTCTCTGAGCCAATCACAGAGAAGAGGGTGGAGTCACAGGCAGTTGCCAAGGTGACACCCCTGGACAGGTGTGGTGAGCTGGAACACTGGCGTGAGGTTGTGGAAAAACGCATTCAGAGTAAGACACGGCGCATCAGtaagGGTGTGTCACAGCCCCATAAAGCCACTCCGAACCGCTACGCTCCTGTCGCTGGCTACTTCTTCTTTCCCCTGTTGAGAAACTACgacagggtgcaggtgacctttgaccttttggGCAGTGACCACCTGGTGCTGGGAAGACTGGTACACACACTCGGACTGCTAATGCACCTGGCCATCAATGCtccggt
>TU20271
AGCTGGACAAGGCAGTGATTCTGAGCTTGACAgtgatgaTGAGCTCACTCCGTATGACATGTCTGCTGATCAGGTGAAGCAGAAGGCGACTCCGCCCCGCTACGTCCGAGACTGTCTGGACGCCCTGATGTCGTCTGATGACCCGGAGAGGGTGGAGCTGAGTCTTCAGGCAGCAGATGGGCTTCTGAGGAGGAACATCAGCACCACACGAGAGgtgagCGTACAGTTCAGTAAAGTGCTGTTACACCTGGAGGACAGGTACAACATCATAGGCTTCTACACACTCCGGCAGAACGCCATGGTGGCCcttgctgtcacacacacacagccgGTTGTGGAATATCTGACTGCTGAGTTTTACTCTCTGAACTACAGCCTGAGACAGAGG
>TU20272
gtgatgaTGAGCTCACTCCGTATGACATGTCTGCTGATCAGGTGAAGCAGAAGGCGACTCCGCCCCGCTACGTCCGAGACTGTCTGGACGCCCTGATGTCGTCTGATGACCCGGAGAGGGTGGAGCTGAGTCTTCAGGCAGCAGATGGGCTTCTGAGGAGGAACATCAGCACCACACGAGAGgtgagCGTACAGTTCAGTAAAGTGCTGTTACACCTGGAGGACAGGTACAACATCATAGGCTTCTACACACTCCGGCAGAACGCCATGGTGGCCcttgctgtcacacacacacagccgGTTGTGGAATATCTGACTGCTGAGTTTTACTCTCTGAACTACAGCCTGAGACAGAGG
>XM_034308978.1
TCCACACGGACGGTTTTAGTGTCTGGACCTGATCAAGATGGCGGATTTTGGTGCCTAATTTGAGACTTCGCGCATCAGTAAACAGATGTAAACaaagtgtttaaaatatattcgctggagtttatttattttaatatcgAAGAAAAGCGAATAAACGCTGTAGCTTTTGTGTTCGGGGTTTGagggagttttttttaaagtgtgtgtgatggagcgGCAGTGTGCTGAGGCGCAgctgcgtgtgcgtgtgtgtgagtgtgtgaagcgCATCGCCACGTCTCGGGATCACACAGAGTTCCACGatgctctacacacactcacacactacctGGAGGGCGGAGACGCCTCGGCCGGGGACAGGGCTGAATTCCAGCGAGCTCATTACACACACGTCCTGCAGGCGCTGCTCACCTCGCTCACCTCTGACTGCTTCCACACGCTGAGTGATGAAAAGCGCAGGGAACTGTGGGACGCATTCTTCCTCCGAGGGCCTCCAGACCAGGCGCTGCTGGTGTTACTGGACTCCATCAGCTCTCAGAGtgagagTTCAGCTCTGgaccggtgtgtgtgtgtgttggaggcgTTCCTCACAGCTGGGCGTGTCGGTGTGCTGTTGTGGTCTCGCTGTGTGGACACTGACTCACGCTGTGACTCCGCCCACCTCCGAGAGGTCGTGTTGAACCGGCTGGCGTCTCTGCCTGCTCTGATCGCCAACCGGctcggcacacacacaccgccgtCGCTCACAGAGCAGCAGTACTACACACACCTCGCTCTCCACGTCCTGCACACACTGGAGAGGATCTGCAGTGCTCTCAGAGCGGGACAGGACTGCTCTGTGGTGTTTGTGTCTCAGCTGTTGGGGAAAGTGTGTATGCAGGGACATGGAGagttggTGTTTGGGACTCTGGCTCCCCGgctctcctctctcacacactcggACGCTCTGTGGCGGCGTGTGAGCTGCAGACTGCTGGAGAACGTACCGGAACGCTGGGTGGAGAGCGTCATCACGCCACTCATACACAACCTGCAcggGTCATCAGCGTTGTCAAGGGTGATGGGGAATCTTGTGTTAAAGAATAAGAAAGTTCAGTTTGTTCTCACTCACAAACTCCTGCTGCTGCAGTATCATCACCCggtgcgGGTGTTGAAGAGTGTGTTGGGGTATCTGGCGCTGGATAAAGAGAGAAGACCACTTCTcaaacaggtgctgcgcagtgtgtgtcaggtgtggTGTAACAGCAGTGCAGTGAGACACACTCCAGTGGAGCAGCAGCTGTACGTGAGTAAAtccctgctgctgtgtgtgtgtctcctccaTCACACTGAGATACCAGAGCTACGGGAagACTTGttgcagtgcatgctgggaggaGTGCAGTGTCGGCTGGACAGCAGTGTGGAGCGCGTGCGGAGGATGGGCATGGTGGTGGGCGAGTGTATCAGCCGGAGATTAGACACGCCCACCTCGCAGCTCAAATTCCAGtatgaggaagatgaggagagCAGAGAGTTGCTGGCTCTGATGGAGCCTCAGACTaaagaggatgaagatgaaCAGCAACCACCTGATGCGACACATAGACCTGAGGCCAAAAGTCAGAGTTCATCAGGACAGTCGGTGACATCACAgctcccaacgaccaatcagaCGTCTGCAGCTGGACAAGGCAGTGATTCTGAGCTTGACagtgatgaTGAGCTCACTCCGTATGACATGTCTGCTGATCAGGTGAAGCAGAAGGCGACTCCGCCCCGCTACGTCCGAGACTGTCTGGACGCCCTGATGTCGTCTGATGACCCGGAGAGGGTGGAGCTGAGTCTTCAGGCAGCAGATGGGCTTCTGAGGAGGAACATCAGCACCACACGAGAGgtgagCGTACAGTTCAGTAAAGTGCTGTTACACCTGGAGGACAGGTACAACATCATAGGCTTCTACACACTCCGGCAGAACGCCATGGTGGCCcttgctgtcacacacacacagccgGTTGTGGAATATCTGACTGCTGAGTTTTACTCTCTGAACTACAGCCTGAGACAGAGGCTCGACATCCTGAGAGTCCTTGCTGTCTCCGCCCAGGAGCTCTCTGAGCCAATCACAGAGAAGAGGGTGGAGTCACAGGCAGTTGCCAAGGTGACACCCCTGGACAGGTGTGGTGAGCTGGAACACTGGCGTGAGGTTGTGGAAAAACGCATTCAGAGTAAGACACGGCGCATCAGtaagGGTGTGTCACAGCCCCATAAAGCCACTCCGAACCGCTACGCTCCTGTCGCTGGCTACTTCTTCTTTCCCCTGTTGAGAAACTACgacagggtgcaggtgacctttgaccttttggGCAGTGACCACCTGGTGCTGGGAAGACTGGTACACACACTCGGACTGCTAATGCACCTGGCCATCAATGCtccgGTGGCGACCCAGATGGGCAAAGCTCTTCTGGACTTTGTGTATGCACGCTTCCATGCTGACCAgatgGTGAGGAGAGGTGTGTTGTTctcagtgtgtgctgtgtttttgagCATGCCCAGTGAAAATCTGCTGCTGGAACTCAGTGATGATCTAGTAGAGACCAGGTCATGGCTcgcagatgtagcAGAGACTGATCCTGATGCAGACTGCCGGAGTTTGGCTGTACAGAGTTTAGTGCTGCTGgaaaaaaacctcaaaactCACCTGCAAAACCCCATGCTGGAaagctgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
telo2 Predicted to enable Hsp90 protein binding activity and telomeric DNA binding activity. Predicted to be involved in protein stabilization and telomere maintenance via telomerase. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be part of ASTRA complex. Predicted to be active in cytosol. Orthologous to human TELO2 (telomere maintenance 2).

NR:

description
telomere length regulation protein TEL2 homolog isoform X5

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K11137 TELO2, TEL2; telomere length regulation protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU20248 False 539 lncRNA 0.47 2 30988123 30990026
TU20249 False 346 lncRNA 0.56 3 30991890 30992853
TU20271 False 388 TUCP 0.54 5 30993069 30997169
TU20272 False 356 TUCP 0.55 4 30993069 30996234
XM_034308978.1 True 2792 mRNA 0.54 22 30988294 31014649

Neighbor

gene id symbol gene type direction distance location
LOC113547558 LOC108268894,LOC108264971,LOC108273546,LOC108270747,LOC108257668,LOC108270753 coding downstream 5208 30970017 ~ 30982915 (-)
LOC117595698 NA coding downstream 198713 30785963 ~ 30789410 (-)
trnah-gug NA coding downstream 354986 30633066 ~ 30633137 (-)
xrcc2 xrcc2 coding downstream 401433 30582017 ~ 30586690 (-)
kmt2ca kmt2c coding downstream 426210 30400155 ~ 30561913 (-)
ntng1a ntng1,LOC102781425 coding upstream 151777 31166426 ~ 31312036 (-)
prmt6 prmt6 coding upstream 311265 31325914 ~ 31327457 (-)
arhgap29a arhgap29 coding upstream 917820 31932469 ~ 31991048 (-)
trnar-ccg NA coding upstream 1004446 32019095 ~ 32019167 (-)
trnar-ccg_1 NA coding upstream 1063894 32078543 ~ 32078615 (-)
G17025 NA non-coding downstream 98909 30841965 ~ 30889214 (-)
G17000 NA non-coding downstream 221414 30766189 ~ 30766709 (-)
LOC117596846 NA non-coding downstream 223646 30763585 ~ 30764477 (-)
LOC117595754 NA non-coding downstream 348099 30637849 ~ 30640024 (-)
G16897 NA non-coding downstream 350539 30637083 ~ 30637584 (-)
G17222 NA non-coding upstream 14807 31029456 ~ 31029677 (-)
G17265 NA non-coding upstream 82183 31096832 ~ 31097965 (-)
G17277 NA non-coding upstream 112084 31126733 ~ 31130151 (-)
G17285 NA non-coding upstream 150362 31165011 ~ 31166371 (-)
G17338 NA non-coding upstream 297753 31312402 ~ 31312656 (-)
G16900 NA other downstream 345149 30640698 ~ 30642974 (-)
gpr158a gpr158 other downstream 654903 30232323 ~ 30333220 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 1173309 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 1383885 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 3434617 27445558 ~ 27553506 (-)
rnpc3 rnpc3 other upstream 570092 31584741 ~ 31611972 (-)
G17630 LOC108267341 other upstream 985976 32000625 ~ 32052554 (-)
G18097 ift140 other upstream 1575253 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 1885220 32899869 ~ 32955703 (-)
G18432 NA other upstream 2556730 33571379 ~ 33571830 (-)

Expression


Co-expression Network