rnpc3 (rnpc3)



Basic Information


Item Value
gene id rnpc3
gene name rnpc3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 31584741 ~ 31611972 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU20479
GAGAGATGtagattttcacatttttgtagtatttaattaacagattaattgagtaaaatattgtattacttttaataaacacagcTCTTGAAAGTCAGACTTTGATGTCTGAATGCTGCattgttcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtttgatATTGTTTTAATGAAGGAGGGAAGAATGAAAGGTCAAGCCTTCATCGGGCTCCCCAGTGAGAAAAGTGCAGAGAAGGCCTTGAGGGACACGAACGGATACGTCCTACACGACAAGCCCCTAGTGGTTCAATTTGCTCGATCTGCGAAACCTAAACAAGACGCGGTGGATTCGAAGACTGGAAGCAAAAAACACTAAGCGGCTCCCAGGTGAAGAATCTCCTCCTCAGCGTCCTCACAAGACGTTCATCACTCTCTCCGAGTCCATACTACAGTCATTactgtgtgtcattaatgtaacgtgat
>XM_034308814.1
GGTCTGCTCCCTACATTAATGTCCTATGTAGGGTGTGAAATAACGGCTTCCAGTACTGTGTGTAGCGCGTAGGGCGCTAGCAGTGCGGTTTGAGACACGACCGCTGCTTGTGGAGCCAATTTCAACCGGgtgtgagtCATGGCGCAGCAGGACGAGGACAGCGCCCCCACTAAGCGCAGTAAGACCCTGATCGTGAGGCACCTGCCTGCAGACCTGAGCcgagaggagaaggaggaccTGCTGGTGTACTTCGGTGCCTCGTCCGTGCGCGTGCTCTCCGATAAAGGCCCTTTAaaacacacCGCTTTTGCTACGTTCAACAGCGAGACTTCAGCCTCGAAGGCTCTTCGGAGGCTCCATCAGATGAGGATTCTGGGTCACACGCTGGTCGTGGAGTTTGCGAAAGATCAAGAGAACGTCATCGTGTTGAAGAGTCCGAAAGTTTCCGACAGGTTTGCAGATGATCCGGAtgaaaaggagaagaaggagagtCAGCAGCCGAGCGTTCCTCTCATCGAGACCGGCATCGCTCCCAGTCtcggGTTAAAATTCCAAGCGAATCCgacactgaaatatttatacCCCCCTTCGAGTGCCATCCTGacgaacatcacacacaccctcctgaGCGTGCCCAAGTTCTACGTTCAGGTTCTTCACCTGATGAATAAGATGAACCTGCCGTGTCCGTTCGGACCCGTAACCACCCCTCCTCCAGCGTACACAATGGCTCACGGCCCGTTGCCCCCGATGGTGCCCCCGCCCCCTGCGTTACCCCCGGAGAACCCCCCTCTGCCTGAGGGCACCAGCGATGAAGAGGAGGAGTCTGAGTACGAGAGCGGAGATGATGAAGATAAAGAGAGGATGATCAGGCTGATGGGGCTCGTTAACCAGCCATGCAAACGACCTCTGAGAACAAAGATGGCCGCCACGAGGAAGAAACCCAAACTGAAGGACCTGCTGTTTACCCCCAAACCTGAACTGCACAGCGCTCCAGGTCCCGCTCTCAGGCCCTCTGACGTGTTCGAGCAGCCGCTTCATCTCGGACCCAAGAAGATCGAGTTCCACATCCCGGCTGAGACGAGTGTGAGAgcgcaggaggaggaggagcagcagcagcagcagcagcaggaggaggaggaggaggagactcGGGAGAAAGCAGCAGACTCAGCGGAGCAGGAAGCAGGAGGATCGGGATTTGGGAAGCTGTATCCcagcacacagagctgcagagaggaagagagtggagaagaagaagatgaaatcCCCTCTGAGTTCATCTCCaggagagagctggagagaggcCGACTCTCCAGAGATGACATGAAGAGGATGTCTGTGTTTAAGAACTACGAACCCGGAGAACCAACATGCAGGCTTTATGTGAAGAACATCGCCAAACAAGTGGAAGAAAAAGACCTGAAGTATATCTACAGCAGGTACATCGATACATCATCAGTGAAGGAACAGgtttgatATTGTTTTAATGAAGGAGGGAAGAATGAAAGGTCAAGCCTTCATCGGGCTCCCCAGTGAGAAAAGTGCAGAGAAGGCCTTGAGGGACACGAACGGATACGTCCTACACGACAAGCCCCTAGTGGTTCAATTTGCTCGATCTGCGAAACCTAAACAAGACGCGGTGGATTCGAAGACTGGAAG

Function


symbol description
rnpc3 Predicted to enable U12 snRNA binding activity and pre-mRNA intronic binding activity. Acts upstream of or within several processes, including liver development; mRNA splicing, via spliceosome; and pancreas development. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Is expressed in digestive system; pharyngeal arch; post-vent region; proliferative region; and sensory system. Human ortholog(s) of this gene implicated in isolated growth hormone deficiency. Orthologous to human RNPC3 (RNA binding region (RNP1, RRM) containing 3).

NR:

description
RNA-binding protein 40 isoform X1

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K13157 RNPC3; U11/U12 small nuclear ribonucleoprotein 65 kDa protein

RNA


RNA id representative length rna type GC content exon number start site end site
TU20479 False 476 lncRNA 0.48 3 31584741 31587833
XM_034308814.1 True 1662 mRNA 0.54 16 31587218 31611972

Neighbor


gene id symbol gene type direction distance location
prmt6 prmt6 coding downstream 257284 31325914 ~ 31327457 (-)
ntng1a ntng1,LOC102781425 coding downstream 272705 31166426 ~ 31312036 (-)
LOC113547558 LOC108268894,LOC108264971,LOC108273546,LOC108270747,LOC108257668,LOC108270753 coding downstream 601826 30970017 ~ 30982915 (-)
LOC117595698 NA coding downstream 795331 30785963 ~ 30789410 (-)
trnah-gug NA coding downstream 951604 30633066 ~ 30633137 (-)
arhgap29a arhgap29 coding upstream 320497 31932469 ~ 31991048 (-)
trnar-ccg NA coding upstream 407123 32019095 ~ 32019167 (-)
trnar-ccg_1 NA coding upstream 466571 32078543 ~ 32078615 (-)
trnar-ucg NA coding upstream 473757 32085729 ~ 32085801 (-)
trnar-ccg_2 NA coding upstream 474505 32086477 ~ 32086549 (-)
LOC117598001 NA non-coding downstream 134200 31413757 ~ 31450541 (-)
G17347 NA non-coding downstream 222280 31362230 ~ 31362461 (-)
G17338 NA non-coding downstream 272085 31312402 ~ 31312656 (-)
G17285 NA non-coding downstream 418370 31165011 ~ 31166371 (-)
G17277 NA non-coding downstream 454590 31126733 ~ 31130151 (-)
G17408 NA non-coding upstream 28179 31640151 ~ 31700439 (-)
G17409 NA non-coding upstream 63248 31675220 ~ 31678689 (-)
G17411 col11a1 non-coding upstream 67690 31679662 ~ 31758223 (-)
G17418 NA non-coding upstream 95102 31707074 ~ 31709048 (-)
G17422 NA non-coding upstream 106712 31718684 ~ 31734954 (-)
telo2 telo2 other downstream 570092 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 581432 31002409 ~ 31003309 (-)
G16900 NA other downstream 941767 30640698 ~ 30642974 (-)
gpr158a gpr158 other downstream 1251521 30232323 ~ 30333220 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 1769927 29797753 ~ 29814814 (-)
G17630 LOC108267341 other upstream 388653 32000625 ~ 32052554 (-)
G18097 ift140 other upstream 977930 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 1287897 32899869 ~ 32955703 (-)
G18432 NA other upstream 1959407 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 1960781 33572753 ~ 33616366 (-)

Expression



Co-expression Network