G18133


Basic Information

Item Value
gene id G18133
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32641355 ~ 32645315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21339
ctctcatctttctttaagtcctgtttcacagacacactcattttggaggtcatgtctcctcctACAGATTACAcctgtaaacctacacacacacacacacacgcacacgcacacgcacacacagagagagagagagacagagaatatgaatttaaaaactCTCTTTATTTGATCATTCAGATAACAattatcaataataaaaaaaaacaatagttaCAAGGAAAGGagcaagaaaaacaatcaaatccatttcaaacagtaaaagagaaaaaaagacacaatgcCTCTATGGAGAGATGGAGTGTATTTACGGGCGAGTGGAGGAGCATAAAATGGCATCTTCTGAAAGACATGGCGTGTTTTAGTGACGGCTGTTTGCAGCCCAAAGAACTAGCGATTCTACAAAAGTTGCAGATTTCCAAATGAAGCACTGAGCCCAGTGACACCATTTTAAAAGAACTAGCGATTTTCCCGAATTGGAAGAGACGCCTGACGCTCCAGCGcttcattagagagagaaacactgcaggacacatatttacttcactccaacatggcGGTGTTAAATCTAACCCTGTATCATCACACGCTTCACTTACAGGGAAATCAGCTCCTACAGTAAACTGTGGAAGTTACAACTTCAGTACAAATCAACTGAACTGTTCTTCATCTAgtgcacattcacaacattcacatattagagctttacatttacatacttactgtgtttttctcctgccaATGATTTACTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21339 True 754 lncRNA 0.40 2 32641355 32645315

Neighbor

gene id symbol gene type direction distance location
tmem204 tmem204 coding downstream 18621 32610019 ~ 32622734 (-)
LOC113547549 NA coding downstream 65924 32562537 ~ 32575431 (-)
LOC113547553 NA coding downstream 102008 32521620 ~ 32539347 (-)
enkur enkur coding downstream 395744 32238940 ~ 32245611 (-)
prtfdc1a prtfdc1,unm_sa821,LOC107755703,LOC107588087,LOC107664644 coding downstream 403542 32219895 ~ 32237813 (-)
fam234a fam234a coding upstream 42282 32687597 ~ 32696711 (-)
ccdc78 LOC108269459 coding upstream 231155 32876470 ~ 32895850 (-)
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding upstream 278552 32923867 ~ 32953931 (-)
LOC117597388 NA coding upstream 313306 32958621 ~ 32972206 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 605532 33250847 ~ 33284417 (-)
G18087 NA non-coding downstream 32794 32538754 ~ 32608561 (-)
LOC117597779 NA non-coding downstream 283601 32355196 ~ 32357754 (-)
G17850 NA non-coding downstream 287281 32353860 ~ 32354074 (-)
G17631 NA non-coding downstream 543577 32053783 ~ 32097778 (-)
G17498 NA non-coding downstream 742599 31898557 ~ 31898756 (-)
G18136 NA non-coding upstream 4909 32650224 ~ 32650785 (-)
G18110 NA non-coding upstream 39202 32684517 ~ 32729038 (-)
G18143 NA non-coding upstream 62141 32707456 ~ 32708126 (-)
G18144 NA non-coding upstream 65386 32710701 ~ 32710972 (-)
G18157 ptx4 non-coding upstream 154368 32799683 ~ 32808266 (-)
G18097 ift140 other downstream 44550 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 588801 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1029383 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1626706 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 1638046 31002409 ~ 31003309 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 254554 32899869 ~ 32955703 (-)
G18432 NA other upstream 926064 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 927438 33572753 ~ 33616366 (-)
G18848 NA other upstream 1369733 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1620989 34266304 ~ 34270306 (-)

Expression


Co-expression Network