G18157 (ptx4)


Basic Information

Item Value
gene id G18157
gene name ptx4
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32799683 ~ 32808266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21366
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaacatctttatttttgtaaatgtcattattgttgttattatcggtgtgtgtgtttgagtataATACACAACCCCATTACATACTGGAGCTTAGAAGATATAGTGTTAGAGctagagttttgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtggtcagtcgTCCTGCACCACCACAACATTGCCGTGGATCTCATACTCCACGGTGCTCCAGTCGAACACGTTTCCACGTGGCACTCTGTGTTTCAGGTTGGCGTACAGAGCGTTGATTTGCATGCGTGACAGCGCAAAGTCCCACATGTTCACATCCGTCATCTCACCCACGAAGCTCTGCGTCACCTCAAAGCCCCCCAGATGTGTGTCAGGGTCCTGGCCGAGCAGCACAGTGCCACGTGGACGGATCTTGTGGCCCGGTCTGTAGATCTGTCGTGTGCTGCGGCGTCCGTCCACATGGAACGCGGCGAGTCCGGTGCTGGAGTCCCACGTCAGACACAGGTGAGTGCGGAAGCTGGAGAGGGGTGTGAGGCGGAAAAGCGCACCGTCTCCGCCCAGGTAGAATGAGATCCGTCCATCCTTCTCGCGCCACATGTTGAGCTCATCTGTGCTGTTGCTGCGATACGCAAAGAGGATGACCTGTCGCTCGTCCTGCAGCTCAGTAGAGATGCGCATGCACAGAGTGAATGCTGAGAGAGCAAGAGGTTTCTGAGGAGATAGCTTGACAAAACTGAAATCTGT

Function

symbol description
ptx4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTX4 (pentraxin 4).

NR:

description
PREDICTED: pentraxin-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21366 True 768 lncRNA 0.52 2 32799683 32808266

Neighbor

gene id symbol gene type direction distance location
fam234a fam234a coding downstream 102972 32687597 ~ 32696711 (-)
tmem204 tmem204 coding downstream 176949 32610019 ~ 32622734 (-)
LOC113547549 NA coding downstream 224252 32562537 ~ 32575431 (-)
LOC113547553 NA coding downstream 260336 32521620 ~ 32539347 (-)
enkur enkur coding downstream 554072 32238940 ~ 32245611 (-)
ccdc78 LOC108269459 coding upstream 68204 32876470 ~ 32895850 (-)
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding upstream 115601 32923867 ~ 32953931 (-)
LOC117597388 NA coding upstream 150355 32958621 ~ 32972206 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 442581 33250847 ~ 33284417 (-)
fgf21 LOC108263130 coding upstream 511598 33319864 ~ 33326553 (-)
G18110 NA non-coding downstream 70645 32684517 ~ 32729038 (-)
G18144 NA non-coding downstream 88711 32710701 ~ 32710972 (-)
G18143 NA non-coding downstream 91557 32707456 ~ 32708126 (-)
G18136 NA non-coding downstream 148898 32650224 ~ 32650785 (-)
G18133 NA non-coding downstream 154368 32641355 ~ 32645315 (-)
G18176 NA non-coding upstream 114736 32923002 ~ 32943136 (-)
G18170 LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753 non-coding upstream 135470 32943736 ~ 32951342 (-)
LOC117597511 NA non-coding upstream 135694 32943960 ~ 32945004 (-)
G18182 NA non-coding upstream 172809 32981075 ~ 32981310 (-)
G18197 LOC108273185 non-coding upstream 205514 33013780 ~ 33061512 (-)
G18097 ift140 other downstream 202878 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 747129 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1187711 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1785034 30988123 ~ 31014649 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 91603 32899869 ~ 32955703 (-)
G18432 NA other upstream 763113 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 764487 33572753 ~ 33616366 (-)
G18848 NA other upstream 1206782 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1458038 34266304 ~ 34270306 (-)

Expression


Co-expression Network