G18412 (LOC108268894,LOC108263642,LOC108261257,LOC108268260,LOC108273545,LOC108273219,LOC108270753,LOC108273691)


Basic Information

Item Value
gene id G18412
gene name LOC108268894,LOC108263642,LOC108261257,LOC108268260,LOC108273545,LOC108273219,LOC108270753,LOC108273691
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33413692 ~ 33454711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21679
aggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtaagaattataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagatactgaggctgcagtgctgcagtattacaggtgaaggttgtgctgctctggtttcagctctgaagtcaaacacctcatcacacctgagagaactgaatctgaaccacaataaaccaggagaatcaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagacactacaaTTTGAGCCGCTTtaattctgatctgatctgatctgagtctcacacacagaggatgatgaggagaaactcttacagtacaaagtgtttgaaaaacatgatcatTTAGTGATAATCAGATGGTGTACAACATGTCAGCACTTCTGCTTCTCTAgttgtttgtaaaaatgcaccagctgagataaataaactttaactgtacagtaatgaatcttttcttattaacagcaaaacagaaactgttaatgcacttataatgacatttaatagttttgtatatacagtatgttcatgtttttccatttacattaGCAGAAGgtaacatttatgtttaaaacacattataaatatctTATAGTATCAGTTCAATGCAGTAATTTGGTCATTGCTCaaagttatacactgtttatacactgagttaAAGTCATTTGTTTCCTACTGAAGTTGTTAGAAAATTAAGAttagaaaagtttaatttagtCGACTCTGtacataattatgttttaaatttattaaatcgtg
>TU21681
ctcccaggctgtgtgagtgtaatctcacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagttacaataacctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacactgaggctggaatactgcagtattacaggtgaaggttgtgctgctctggtttcagctctgaagtcaaacacctcatcacacctgagagaactgaatctgaacctcaataaaccaggagaatcaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagaaactacaaTTTGAGCCGCTTtaattctgatctgatctgatctgagtctcacacacagaggatgatgaggagaaactcttacagtacaaagtgtttgaaaaacatgatcatTTAGTGATAATCAGATGGTGTACAACATGTCAGCACTTCTGCTTCTCTAgttgtttgtaaaaatgcaccagctgagataaataaactttaactgtacagtaatgaatcttttcttattaacagcaaaacagaaactgttaatgcacttataatgacatttaatagttttgtatatacagtatgttcatgtttttccatttacattaGCAGAAGgtaacatttatgtttaaaacacattataaatatctTATAGTATCAGTTCAATGCAGTAATTTGGTCATTGCTCaaagttatacactgtttatacactgagttaAAGTCATTTGTTTCCTACTGAAGTTGTTAGAAAATTAAGAttagaaaagtttaatttagtCGACTCTGtacataattatgttttaaatttattaaatcgtg
>TU21682
cacacacacacacacacacacacacacacacacacacacacagtacatgcaAAATGATCTAagtaaaaggataaattatatttgtgtatgtttgtgtttgagatgtcagtgttctgatatatcatcatttctctcccaggctgcattcgtgtaatctcacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgacaatattaacctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacactgaggctggaatactgcagtattacaggtgaaggttgtgctgctctggtttcagctctgaagtcaaacacctcatcacacctgagagaactgaatctgaacctcaataaaccaggagaatcaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagaaactacaaTTTGAGCCGCTTtaattctgatctgatctgatctgagtctcacacacagaggatgatgaggagaaactcttacagtacaaagtgtttgaaaaacatgatcatTTAGTGATAATCAGATGGTGTACAACATGTCAGCACTTCTGCTTCTCTAgttgtttgtaaaaatgcaccagctgagataaataaactttaactgtacagtaatgaatcttttcttattaacagcaaaacagaaactgttaatgcacttataatgacatttaatagttttgtatatacagtatgttcatgtttttccatttacattaGCAGAAGgtaacatttatgtttaaaacacattataaatatctTATAGTATCAGTTCAATGCAGTAATTTGGTCATTGCTCaaagttatacactgtttatacactgagttaAAGTCATTTGTTTCCTACTGAAGTTGTTAGAAAATTAAGAttagaaaagtttaatttagtCGACTCTGtacataattatgttttaaatttattaaatcgtg
>TU21684
gtttaattatttcattagtgcAGGTACAAGAGAGCTTTTAGGATGTATTAAAAAGTGCTTAATTTCTAAAaggataaacattatatttgtgtatgtttgtgtttgagatgtcagtgttctgatatatcatcatttctctcccaggctgcgtgactgtaatctcacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagttacaataataacctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacactgaggctggaatactgcagtattacaggtgaaggttgtgctgctctggtttcagctctgaagtcaaacacctcatcacacctgagagaactgaatctgaacctcaataaaccaggagaatcaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagaaactacagtgagttactgactgaaacacacacacacacacacacacacacacacacacagtaacagtgatttttactgattatgtagtttaatcatttctgttt

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21679 False 851 lncRNA 0.37 3 33413692 33454711
TU21681 False 878 lncRNA 0.37 3 33413692 33453418
TU21682 True 1013 lncRNA 0.37 3 33413692 33415273
TU21684 False 595 lncRNA 0.39 2 33414410 33420552

Neighbor

gene id symbol gene type direction distance location
fgf21 LOC108263130 coding downstream 87139 33319864 ~ 33326553 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding downstream 129275 33250847 ~ 33284417 (-)
LOC117597388 NA coding downstream 441486 32958621 ~ 32972206 (-)
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding downstream 459761 32923867 ~ 32953931 (-)
ccdc78 LOC108269459 coding downstream 517842 32876470 ~ 32895850 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 7067 33461778 ~ 33472267 (-)
LOC117595708 LOC108263642,LOC108270747,LOC108274210,LOC108273544,LOC108273692,LOC108270753,LOC108261406 coding upstream 44573 33499284 ~ 33506987 (-)
LOC117595702 LOC108270753,LOC108273692,LOC108257668,LOC108273544,LOC108273546,LOC108264948,LOC108273691,LOC108261167,LOC108412230 coding upstream 59784 33514495 ~ 33527798 (-)
LOC113524637 LOC108268628 coding upstream 76831 33531542 ~ 33546245 (-)
LOC113524634 LOC108268402 coding upstream 94576 33549287 ~ 33567633 (-)
G18323 NA non-coding downstream 61510 33351964 ~ 33352182 (-)
G18299 NA non-coding downstream 180653 33232818 ~ 33233039 (-)
G18280 NA non-coding downstream 222484 33190547 ~ 33191208 (-)
G18279 NA non-coding downstream 224018 33189196 ~ 33189674 (-)
G18275 LOC108277266 non-coding downstream 240813 33172306 ~ 33172879 (-)
G18425 NA non-coding upstream 20710 33475421 ~ 33481825 (-)
LOC117597603 NA non-coding upstream 32183 33486894 ~ 33488214 (-)
LOC113524631 NA non-coding upstream 39029 33493740 ~ 33497451 (-)
G18446 NA non-coding upstream 264232 33718943 ~ 33719150 (-)
G18794 NA non-coding upstream 402997 33857708 ~ 33858166 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 457989 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 816887 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1361138 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1801720 31584741 ~ 31611972 (-)
G17199 telo2 other downstream 2410383 31002409 ~ 31003309 (-)
G18432 NA other upstream 116668 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 118042 33572753 ~ 33616366 (-)
G18848 NA other upstream 560337 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 811593 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 829355 34284066 ~ 34998396 (-)

Expression


Co-expression Network