G18423


Basic Information

Item Value
gene id G18423
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33449578 ~ 33450920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21697
AAGATCACTTTCAGGCCTCCGTGTCACCTTGTGCACTATACTGGTTCCATACATCTACAACATTGAggattaaatattatcaaatcTGAGTACACATATTGTAGTTAATATTTTATggttacaatatttctataCAATATGCAGTATTGTCCTGTCATGCCCTCTAACTATCGACGACTGATGATAGTATCACCGGTAGGTTTGGTGGTGTGTACAGTAGGCtgcagctagtgtgtgtgtgtgtgtgtgtgctgctgaggAGGGAAAAGAAGGGAGCATTGTCAGATATACAGTACGTCACAAGTGTTGTATACACGTTACTTTATTACAGCGGAAAAAAACTCAGCCTTTCATAATAATGACTTGTAAGAAAGTGATccccaaaacaaatccataaattaagagtTAGTGAGCTgtaatggctgagctgcattattggaatATTTAGTGCATAGGATCCTTCATGAAGCAGAGTAGAGATGAAACCAGATGAAGAACCTGCTGCACAGCACATGAGACATTATTTCTTCTGCACatgaacaaaatggctgactttttttcaaagaaaaaattTCAGGCTAATATAATCTTCAGTTCTGCAATTATAGATATACATTCAGAAGTGTCATATTTCGTTTAAACACTCAAACACTATTTTATTCAACCTGGAAGTATATACACAGGCAAtttacagactgtgtgtgtgtgtgtgtgtgtgtgtgtgttatgtctCATCGTGGGACTGTAAGTACACAGGCTTGGCTTGTTTCCTGAGTCGCTGCTGTGCTCGAAGCTTTCTGCCTTTCTGAGTGGCCAAACCCATCGGAGGAAGATACAACTACAGAGagggaaattattattattattttgttgttgttgttgtagatgttgttgttgttgttgaatatTAGAGATTAACTTACAGGTCTGGGATACGGATTTCTGTAATGCAGTCCtttcataaacacataaacacacagaacttTAAAAATTGTTCACTCCTAAAAGTATTTAAgtgtttaaaagtaaaaattaaaaggtTAATTTATGTTAGTAGAAGAAATatgaaggttaaggttagggatGGTGCTAATGGTTAGCATTCATACGTTTTTAGACCAtttaatttatatgaaattaaatccAATTTAACCACGTTACTGTTATACGACTTCATAACTTTAAAAAGCAAGTGAAACTAATTACTCAGCTATGATTAGTTCtgctaataaacactgtgtgtttttttctgttgtaatGAAACACAGAGTGACATGgtggaagttgattattttcctataacagcacgtcccca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21697 True 1315 lncRNA 0.36 2 33449578 33450920

Neighbor

gene id symbol gene type direction distance location
fgf21 LOC108263130 coding downstream 123025 33319864 ~ 33326553 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding downstream 165161 33250847 ~ 33284417 (-)
LOC117597388 NA coding downstream 477372 32958621 ~ 32972206 (-)
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding downstream 495647 32923867 ~ 32953931 (-)
ccdc78 LOC108269459 coding downstream 553728 32876470 ~ 32895850 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 10858 33461778 ~ 33472267 (-)
LOC117595708 LOC108263642,LOC108270747,LOC108274210,LOC108273544,LOC108273692,LOC108270753,LOC108261406 coding upstream 48364 33499284 ~ 33506987 (-)
LOC117595702 LOC108270753,LOC108273692,LOC108257668,LOC108273544,LOC108273546,LOC108264948,LOC108273691,LOC108261167,LOC108412230 coding upstream 63575 33514495 ~ 33527798 (-)
LOC113524637 LOC108268628 coding upstream 80622 33531542 ~ 33546245 (-)
LOC113524634 LOC108268402 coding upstream 98367 33549287 ~ 33567633 (-)
G18418 NA non-coding downstream 7358 33441675 ~ 33442220 (-)
LOC117597510 NA non-coding downstream 35012 33413680 ~ 33414566 (-)
G18323 NA non-coding downstream 97396 33351964 ~ 33352182 (-)
G18299 NA non-coding downstream 216539 33232818 ~ 33233039 (-)
G18280 NA non-coding downstream 258370 33190547 ~ 33191208 (-)
G18425 NA non-coding upstream 24501 33475421 ~ 33481825 (-)
LOC117597603 NA non-coding upstream 35974 33486894 ~ 33488214 (-)
LOC113524631 NA non-coding upstream 42820 33493740 ~ 33497451 (-)
G18446 NA non-coding upstream 268023 33718943 ~ 33719150 (-)
G18794 NA non-coding upstream 406788 33857708 ~ 33858166 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 493875 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 852773 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1397024 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1837606 31584741 ~ 31611972 (-)
G17199 telo2 other downstream 2446269 31002409 ~ 31003309 (-)
G18432 NA other upstream 120459 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 121833 33572753 ~ 33616366 (-)
G18848 NA other upstream 564128 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 815384 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 833146 34284066 ~ 34998396 (-)

Expression


Co-expression Network