G18425


Basic Information

Item Value
gene id G18425
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33475421 ~ 33481825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU21699
ctttaaaataaaacagtatctgaggtgcagtgtgtgcagttttataaggaaatgagctgtaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcgactcgcttcttatttctgcagcgaaacccagcagccttcattatgtttttatctgaaaagtgtctcttatggaatctgctgctttctttactgacatacaaacatttttctgtaacgtttcattttgtgctggaaaactaatgtttggaatctaaaatgtttttgtactgaatcaataatgtagaagtcagaaaataaacatctataacaaagtttgtactaaaaaaataga

Function

NR:

description
olfactory receptor 52I2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21699 True 351 lncRNA 0.50 2 33475421 33481825

Neighbor

gene id symbol gene type direction distance location
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding downstream 3154 33461778 ~ 33472267 (-)
LOC117597600 LOC108261633,LOC108268894,LOC108273545,LOC108263642,LOC108270753,LOC108263117,LOC108410737,LOC108261292,LOC108412218 coding downstream 22032 33428924 ~ 33453389 (-)
fgf21 LOC108263130 coding downstream 148868 33319864 ~ 33326553 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding downstream 191004 33250847 ~ 33284417 (-)
LOC117597388 NA coding downstream 503215 32958621 ~ 32972206 (-)
LOC117595708 LOC108263642,LOC108270747,LOC108274210,LOC108273544,LOC108273692,LOC108270753,LOC108261406 coding upstream 17459 33499284 ~ 33506987 (-)
LOC117595702 LOC108270753,LOC108273692,LOC108257668,LOC108273544,LOC108273546,LOC108264948,LOC108273691,LOC108261167,LOC108412230 coding upstream 32670 33514495 ~ 33527798 (-)
LOC113524637 LOC108268628 coding upstream 49717 33531542 ~ 33546245 (-)
LOC113524634 LOC108268402 coding upstream 67462 33549287 ~ 33567633 (-)
kcnj12a kcnj12a,LOC108268745,LOC108413805 coding upstream 148213 33630038 ~ 33643243 (-)
G18412 LOC108268894,LOC108263642,LOC108261257,LOC108268260,LOC108273545,LOC108273219,LOC108270753,LOC108273691 non-coding downstream 20710 33413692 ~ 33454711 (-)
G18423 NA non-coding downstream 24501 33449578 ~ 33450920 (-)
G18418 NA non-coding downstream 33201 33441675 ~ 33442220 (-)
LOC117597510 NA non-coding downstream 60855 33413680 ~ 33414566 (-)
G18323 NA non-coding downstream 123239 33351964 ~ 33352182 (-)
LOC117597603 NA non-coding upstream 5069 33486894 ~ 33488214 (-)
LOC113524631 NA non-coding upstream 11915 33493740 ~ 33497451 (-)
G18446 NA non-coding upstream 237118 33718943 ~ 33719150 (-)
G18794 NA non-coding upstream 375883 33857708 ~ 33858166 (-)
G18796 NA non-coding upstream 378113 33859938 ~ 33860410 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 519718 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 878616 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1422867 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1863449 31584741 ~ 31611972 (-)
G17199 telo2 other downstream 2472112 31002409 ~ 31003309 (-)
G18432 NA other upstream 89554 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 90928 33572753 ~ 33616366 (-)
G18848 NA other upstream 533223 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 784479 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 802241 34284066 ~ 34998396 (-)

Expression


Co-expression Network