LOC117597397 (LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971)


Basic Information

Item Value
gene id LOC117597397
gene name LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34288562 ~ 34641985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22455
gtgaaagtgaaagtgcatTTAGTGCAGAAAGGAAGCAAATCATtggcaggagaaaaacacagtttacaggTGTAATCTGTaggaggagacatgacctccaacatgagtgtgtctgtgaaacagcgcttaaagaaagatgagagtctgattcagggtgagagatcagactcacctgaacccagctgtgtgtccatgaagagtgaccagTCAATGGATATACCAATACTCTTTAGAGACACAGACTGTGCTACTGATCTGAGactgcagaagaataaatcaaaaatcagtGAGAAGAGTCATTTGGAggccatattcaaggatctggagcacaaagtcatcactctgttaaagaatgagctgaagagatttaagaagctcctgagtccagattacccagcatgctctgagagggaggtggaggatgaggaggatcagagcagtgtcagagagggagcgctgaagatcacactgcacgtcctgaagaacatgaaccacacagatctcgctaacacactgcagaacagtaagagctcatggggttataacatcactttaactttagaggaaggaaactgctgtaaatttattaaacacatcataatgatgtgctt
>TU22544
ACCAAGTTATGTTTCCGTAGATGCAAACAGCCCCACCTTTGCTTTTCCCAGAGTCCACAGCGGTTCTGCTGCTCTGAACATGTAGCGGCCTCTAGTTCAATCGCGTTGGTCGGCCTGCTGCTATTTAGCCACGTTTCCGTGAAAACCATAACGCTGCAGTTCAGAAACATTTTCTGAGTAATCCGTAGCCGTATTTCATCGATCTTATTAGCCAGAGACCGTACAGTGGCAGGGAAGATGCTCGGTAGCGTTGGACGATGCGGGTTGAGCTTTAGCTTTAGCCCGCAGGCCGCCCCGCTTACCCCGGCTTTGTTTACGTTCGCGACGCCGGCGACGGGCACTTCCTGTCGGACTGGCCGCTCACTTGAGTCCGAGGACCGGAGTGTCTCTGATGGTAGCAGATGGAAGTTTAATGTCTAGTAGATTTTGTCGGCTGTATAAAGTGATCGCAAGGTTGTGACGAACAACCAAGCTTAACATAACTGGTCTTCAAGATGCCTCTGACAACCACAAACCTCAGATTAAAGCCAGATTTTCATGATTCTGGTTCACTCACAAAATCGAGGCATaaaatcagtgcagtgtgtaaacaTCAGCAGGATGTAATgtcacacagagcagcacaaagtcaatgtaaaaacatggaaatgtaaaaacCAGCGTTGCCAACTATTTTCAATGGAAAGTAGCTAAATGTCGCTAAATGTCGTCATGCGTCATTAGCATATTAATGACGTCATCACGTCATATCTGCACTCTGCCGCTGCGTAATGTCGGCACTTCATAACTGTTTTCTCCCCTAATCCGTGCTcactaatttaatataaatatatagccGAATGTCCAGTAAAGCTGTTCTCAATTACATATTTTCTGTCAGTCACCCAAACAGAACTTACTACATGTTAACCAGAAGTTACTTCCACAGCACTGATAAAATTCCGGTGAACCACGACGTCGTTGGACAAAAACCACTCTACATGTAAGTTAAAGACAGCATATGTGCTGTGATATTATCAGTTCTGTTTACGTGGACAATGAGAACTCATAGAGAATGTGTTCTGCCACACAATATTTTGCTTGTTCTCTCACAGTGTAGGCTACAAGTCACAACAATGATATTCAGTTTCAGTCAGGGACGTTAGTGATCATCTGCCCCTAGAGGAGAAACCTTTGGTTcaattatttgcatatttacaaaCGAACTATgtgcatatttacaaaataataataataataataataataataataat
>TU22546
ACCAAGTTATGTTTCCGTAGATGCAAACAGCCCCACCTTTGCTTTTCCCAGAGTCCACAGCGGTTCTGCTGCTCTGAACATGTAGCGGCCTCTAGTTCAATCGCGTTGGTCGGCCTGCTGCTATTTAGCCACGTTTCCGTGAAAACCATAACGCTGCAGTTCAGAAACATTTTCTGAGTAATCCGTAGCCGTATTTCCTCGATCTTATTAGCCAGAGACCGTACAGTGGCAGGGAAGATGCTCGGTAGCGTTGGACGATGCGGGTTGAGCTTTAGCTTTAGCCCGCAGGCCGCCCCGCTTACCCCGGCTTTGTTTACGTTCGCGACGCCGGCGACGGGCACTTCCTGTCGGACTGGCCGCTCACTTGAGTCCGAG
>XM_034304727.1
CTCACCGCTTCAGCAACTCCCAGCGGCAGAGGAACAACTCGTTAGTTCATGTTCGGGCAAATGATGAGAGGGACAAAGTTCTTCCGAAGCATGAGTTTTACTTCTTTAGGCAAATAAAAGTTGTCAGGGTTACAGTGCACAATAACTCCCGGGTGGcttaactgaaataaactaaAGGAAAAGCAAAGCAGAAACTTTTTCTCCCCGTTTTCTCCCCCGAACTGCACAGCCAACACCAGCACCCTTCTTccgaactacattacccatcatgcACTTCGCtcaggactacaacacccacaGTTAGTGATCcggtgaaagtgaaagtgcatTTAGTGCAGAAAGGAAGCAAATCATtggcaggagaaaaacacagtttacaggTGTAATCTGTaggaggagacatgacctccaacatgagtgtgtctgtgaaacagcgcttaaagaaagatgagagtctgattcagggtgagagatcagactcacctgaacccagctgtgtgtccatgaagagtgaccagTCAATGGATATACCAATACTCTTTAGAGACACAGACTGTGCTACTGATCTGAGactgcagaagaataaatcaaaaatcagtGAGAAGAGTCATTTGGAggccatattcaaggatctggagcacaaagtcatcactctgttaaagaatgagctgaagagatttaagaagctcctgagtccagattacccagcatgctctgagagggaggtggaggatgaggaggatcagagcagtgtcagagagggagcgctgaagatcacactgcacgtcctgaagaacatgaaccacacagatctcgctaacacactgcagaacagtaagaGATTTGTCTCTGTGTACCAGCGGAAACTCAAAtccaaactgagagagaaatgtaaaagaattaatgaaggaatctcacagcatggaagctcagcacttctgaatgagatctacacagatctctacatcacagagggtggGAGTGGAGatgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagcaacacaggagacacccatcaaatgtaatgagctctttaaagacaagtccatcagaagtgtgctgactaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggacgtcaccttcatgtttccacttccctttagggagctgaatctgatgaagcagaaaaatctcagtctgatgaaacttcttcatcactttttcccagaaataaataaattacaattaatagactgtaatgttcacaaagtgatattcatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtagaccaggtaacagaggtacgagggttcagtgatcctcagaaaaaggagtacttcaggaagaggatcagtgatcagagcctggccaataaaatcatcacacacatgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatctcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagaagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggagtgtgtacccagatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagtgttcaggagtttctggctgctttatatgaaTTTCTCTCCTTCATTAACAAAAAGAATGCAACACTTCAAACCTGGTTTGGTCTTTtaaccaaatcaaacatgtctgatttcctgagaagtgcagtggacaaggccttacagagtgagaatggacacctggaccttttcctccgcttccttctgggtctctcactggagtccaatcagactctcttacgagacCTAATGccccagacaggaagcagctctcacagcaaacaggaaacagtcgagtTCATCAAgaagaagatcagggagaatccatctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtacagcaTTACCTGAAAAGTAAAGATGACAATCGTCTCAGTGGAGtcagactctctcctgctcagtggtcagctctggcgtttgtgttgctgaactcagacGAGAATCTGGATGAGTTTGATTTGAGTAAATATCACAGATCAGatgaatgtcttctgaggctgatgccagtggtcaaagcatccagaaaagctgtgctgtggaagtgtaatctcacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagttacaataacctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacaGGATCGGTGTTTggttgtcatgtgacatggcGACTCGCTGGGAATCATGGAAATAGCCGTATTTCCTCGATCTTATTAGCCAGAGACCGTACAGTGGCAGGGAAGATGCTCGGTAGCGTTGGACGATGCGGGTTGAGCTTTAGCTTTAGCCCGCAGGCCGCCCCGCTTACCCCGGCTTTGTTTACGTTCGCGACGCCGCGGCGACGGCACTTCCTGTCGGACTGGCCGCCACTTGAGTCCGAGGACCGGAGTGTCTCTGATGGTAGCAGATGGAAGTTTAATGTCTAG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22455 False 611 TUCP 0.53 5 34332749 34334731
TU22544 False 1256 lncRNA 0.43 3 34315247 34641985
TU22546 False 375 lncRNA 0.55 3 34288562 34641985
XM_034304727.1 True 3053 mRNA 0.46 8 34316088 34335042

Neighbor

gene id symbol gene type direction distance location
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding downstream 111568 34165120 ~ 34176994 (-)
nubp2 nubp2,LOC107677256 coding downstream 262954 34019943 ~ 34025608 (-)
LOC113525322 LOC108272270 coding downstream 441646 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 477197 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 516717 33769615 ~ 33771845 (-)
LOC117598307 NA coding upstream 43445 34685430 ~ 34688115 (-)
LOC117598309 NA coding upstream 177942 34819927 ~ 34820909 (-)
LOC117598340 NA coding upstream 195568 34837553 ~ 34845305 (-)
LOC113527256 NA coding upstream 295823 34937808 ~ 34943835 (-)
LOC117597410 LOC108263642,LOC108261292,LOC108270747,LOC108270753,LOC108273691,LOC108264948,LOC108257668,LOC108268379 coding upstream 512493 35154478 ~ 35210846 (-)
G18987 dcun1d3,zgc:154015,LOC107556658,LOC107558230,LOC107561121,LOC102779002 non-coding downstream 50166 34236237 ~ 34238396 (-)
G18972 NA non-coding downstream 83911 34202074 ~ 34204651 (-)
G18960 NA non-coding downstream 135304 34152488 ~ 34153258 (-)
G18958 NA non-coding downstream 137151 34151193 ~ 34151411 (-)
G18905 NA non-coding downstream 148130 34139770 ~ 34140432 (-)
G18943 NA non-coding upstream 818 34642803 ~ 34648376 (-)
G19054 NA non-coding upstream 1469 34643454 ~ 34651941 (-)
G19053 NA non-coding upstream 19693 34661678 ~ 34665352 (-)
G19058 NA non-coding upstream 38039 34680024 ~ 34762821 (-)
G18909 LOC108268894,LOC108261257,LOC108273545,LOC108273219 non-coding upstream 73889 34715874 ~ 34716739 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 18256 34266304 ~ 34270306 (-)
G18848 NA other downstream 251229 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 672196 33572753 ~ 33616366 (-)
G18432 NA other downstream 716732 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1332859 32899869 ~ 32955703 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 167934 34809919 ~ 34929610 (-)
G19080 NA other upstream 310091 34952076 ~ 35160443 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 688281 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 847251 35489236 ~ 35516236 (-)

Expression


Co-expression Network