LOC113547543 (arhgap21,LOC107570046)


Basic Information

Item Value
gene id LOC113547543
gene name arhgap21,LOC107570046
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32115502 ~ 32187493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947923.2
ctcacactctgatCCGGATGGAGTTGGGGTGAAGTGGTGTGATTGTGCACACTTACCATGGCTCACCTCGGGATGCTGGGCTGCATGCTGAACCGCAACTCGTCTGTCAAAAGCCTGATCTGTGACCTGTACTGCGCCTTcaacacacagTGTAAGAAGGATGGCCATGATCCGAGTGAGCTGTCCCCCATGTCCCCCATGTCCCCGGTGCCCATGGACCAGCTCTTCTCCTGGCCCGGACCTAAAACCCTGCACCTGCGCCGAACTTCCCAGGGCTTCGGCTTCACGCTGCGCCACTTCATTGTCTACCCACCTGAGTCTGCCGTACACTCCTCGTTTAAGGATGAAGACAATGGAAGTCGAGGGAGACCGCGGTGTCGTCTTGAGCCGATGGACACTATCTTTGTGAAGCAGGTGAAGGAGGGAGGCTCCGCCCACCAAGCTGGACTCTGCACAGGTGATCGTATAGTGAAGGTGAACGGCGAGAGCATCATCGGCAAAACGTATTCACAAGTCATTGCTCTCATACAGAACAGTGACACGTCTCTGGAGCTCTGTGTGATGCCTAAAGATGAAGACATTTTGCAGTTGTTCTCCCGGGACATCACAGCTCTGGCCTATTCCAAAGATGCATATCTCAAAGGGAATGAAGCATACAGTGGAAATGCACAGAACATCCCAGAACCTCCTCCTATCTGCTACCCACGGATAGAGCCTAAGACGTCAGGGAtgacacacactgatgagcCTTCTGCTCCCTCAGGTGCTCATGGAGTGTTGTCCCAGGGGGCGGAGCCAAGCTCTGATGTGGGCTGTTGTGTGGAAGTCCCTATTACACAATTGTCCCCATCGCCTCCTCGCTCGCATGACTCCAAACTCCAGACTGTTGCATGTGTATATGATGAAAGTGTGCGGGGGGCAGCGGCAGAGGTTTCGGATTCCCTGGAATGTTCTCCTCACCCGTATGACACAAACTCTAACCACAGGTTGcaggagacaaaaaaacacCGCTTTGTACCTCATCCCTTGAAAACCTTTCCTCAGTCCGTCCGAGATCCCAAACCACACCTTGTTCTTCTTCTGCTAGAGGGACACAGTTGCACTACACACCAAAAAGACTGTCAGAATCCCCAGGATTCTCCACACACTTTCCTATACACACTCCTTTTCACCCTGACTCCACATCTACGCCATCCAGTAGACATGCCATGACCATTCACGCCCTCTCCTCCAACTGTTGCATCATCTCCCTGCTCCCCAATGCATCAGAACATTGACTGGAGGAATTACACCACCTACAAGGAGTACATTGACAACAAGCGCCTCTATACGTACGGTAGCAGGACAATCCAGGAAAGACTGGACAGCCTGCGGGCGGCAAGCCAAGCTAGTAACGCAAACACGAGTACAGAGGGCGTGAATGGATCCCAGCCAAGGCAGAGGAGCACTTGTCACGAGCGAGGTCCTGCAAATTCTGGAGTCCAATCTCTATGCAGTGTGTCTCAGGAAAGACTGGAAGTAAAGGAACGAGCAACGTCAAGGGATTGGCATCGAAGTGCATCACAGGATGCACTTCCTTCATCCACAAAGAGCACATACAAACCTCGGGCAAGATCTTGCGACTACCTGGGCAGACAGGCTGAAAGCAGGGTGTCGTTGAtggacagaagagtttatggAAGGACAGAGACGGAGGAGAAGGCACTTACTTGCACTGGAGAGGAGACCAGAGGCTGCAGGCAGTCACTCTCATTAGGCAAAGTGGCACAGACTCAAAGGACCACAGTGGGTGGATATGGCAGTTTCCCAGGACTAAATGCTAAAAGTAAAGGTACAGATCCACAGATACTGAGCTCCAGAGTGGAGAGTCTGGGTAACACTGCTGCTTCTAAGACACGGCTCCCCATTCAGACCTCTGTATTGGACGGCTCCTACGTAGCCAAGGCTCTTGCTTCTTTAAACACAGCCGCAGTGACCACGAAAAACCAAAGAACCGCCCTTGTGCCAAATCACATGTCTCCCGGACGGCAAACTGAGAGCCATCGGGATCCCATTGGTTCCATTCCTTGCCCTGACCAATCCAAAGGTCAAAGGACACAGCAGGATGGGTCAGTAGCCACTAATGGCTCAATTGTGGAAGGTCTTGAAGGTGCAGAGGCCACAGTGGTGGTGGTGAGGagggagaaaacaaaaaaatcaggcCCATTACCTCTCAGACACCCGTCCTACATCCAGGCTGTGAATGACGGAGCAGATAGAGTGGAGAAAATCACAAAGACACCAAAGTGCTGGAGGTCCAACGATGCTGTGCAAGACGGGTACAAACAATTGCTCGGAGAGGAATACAAACCCTCAGGATCCGGCCAACTGCATGAGTCACTCGACTCTATCCCCTTCATTGATGAACCGTCCAGCCCCAGTACTGACCTCGATGACCCACAATTCCCTGTTTGCACCATCGTCTCTGCTGTTCCGCCGAGCCCCACCTCCTCCTCCGCCGTCTTTCACCGCCAGCTCTCTCATGACCAAGactcgTTGCGGCTCACAGTTCTGGATTCAGATTCCGCTGCTAAAACAGAGCGCTCCAAGTCTTACGACGAAGGACTGGACAACTACAGGGACGAAGAACGAGGGAAACTGATAACGCACATCGGTCTGAGAGGTCTTAGGAAGaCTGTGGATCGGTCCTCAGAAGATTCTGGCTCCAGGAGAAACTCTTTGTCAGATGTCTTTGTTAATGCTACTAAGGAGGGAGTCCTGCACTTCCGCCAGTTCAGTTCAGACAAGggcaagCGTGTAGGCGGCGGCATGCGGCCGTGGAAGCAGATGTACGCTGTGCTCCGTGGCCACTCCCTCTATCTGTACAAGGACAAGAAGGAGGGGCAAACGCCAAACTCGCACACGGAGGAGGAGCCTTTGTCGATCAGCATTAAAGCCTGTTTGATTGACATCTCCTACAGCGACACGAAGCGGAAGAACGTCCTGAGGCTGACCACGTCGGACTGCGAGTACCTGTTCCAGGCCGAGGACAGAGAGGACATGCTGGCCTGGATACGAGCTATTCAGGAGAACAGCAACCTGGATGAGGAGAACGCACTGATTACAAGCACAGACCTCATCAATCGCAAAATCAAGGAGTACAACACTCTGATGAGtccaCCCTGCAGTAAGAACGAGCCGTCCCCGAGGTCCTCTCGTCAGTCTCTGAGTATCAGACACACTCTGCTGGGGGGGAACAAAACGCCGAGCCCTCACTCGCCCCACAAGGAGCAGGAGAGGAAAATCCTCCACAGAGATGAAGCGAGTCCACCGAAGGATAAGGGACTGCGGAGGAAAGGGATCCCGGGGCTGATGAGGAAGCCATTTGAGAAGAAAGTTGCTCCTGGAGTCACATTTGGCGTGAGATTGGACGACTGTCCTCCTGCTCACACTAACAGAtttgtgcCCCTGATCGTAGAGGTGTGCTGTAAGCTGGTGGAGGAGAGGGGTCTGGAGTACACGGGGATTTACCGAGTGCCGGGGAACAACGCTGCCATCTCCAGCATGCAGGAGGAACTGAACAGAGGAGTGGGAGAGATCGACATTCAGGAGGACAAATGGAAGGACCTCAATGTGATCAGCAGTTTATTAAAATCTTTCTTCCGGAAGCTTCCTGATCCTCTCTTCACCAACGAGAAATACGGAGACTTCATTGATGCGAACAGAACAGAGGATCCAGTGGAGAGGCTAAAAATACTGAAGAGGCTGCTTCACGAGTTGCCAGATCATCACTACGAGACGCTGAAATTCCTCTCAGCTCACCTGAAAACTGTGGCTGAAAACTCCGAGAAGAACAAGatggaGCCGCGGAACCTGGCCATCGTGTTCGGCCCCACGCTGGTGCGCACATCTGAGGACAACATGACACACATGGTCACACACATGCCTGATCAATACAAGATTGTGGAGACACTTATTCAACACTACGACTGGTTCTTCACTGACGAGGGAGAAGAGGAACCGGAGACGGTGGTCCAGACGGAGAGCGCAGTGGAGACGCAGCCCGTTCCCAACATCGACCACTTGCTCACCAACATCGGCCGCACTGGCGTCTCTCCGGGAGAAGTGTCAGATTCACCCACTAGTGATTCTGCCAAATCGAAGggttcGTGGGGGTCTGGGAAGGACCAGTACAGCCGAGAACTGGTCTCCTCCATCTTTGCTGCAGCTAACCGCAAACGCAAGAAGCCCAAAGAGAAGGTGCATGCCAGCAGCTCTGATGATGACCTGGATGCTGTTTTTCTTGAGAGTGAGCTGCAGAACCAGAAACTAATAGCAGGAGACTCACATGGTGggaaagaacatgaaaaaatacCCAAGGGGCGCAAAGAGCACAGGAACTCGTTCTTTTTGAAGAAACCGTCTCCTACTAAGATCTCTGAAACCCAAAAATATGCTACACTGCCCAGTCTCCGCCTCCGAACGCCAGCTCCTTCCAAAAGCTCCACACCTGAATCACCTTCTCAGGTGGAGGACCTTGGCATCATGAACCCAGGAACATCCGGATCCAGGAATCGGTTGAGAATTTGGGACACAGTAGCTCCAGCTGCCACAGACCTACCTCCAACCGGTCCTGTCGGAGGATCAGCCATGGCAGAAGTGAGCTCCATCACTTCGGATTACTCGACTACCTCCTCCATGACGTTCCTGACGGGGGCGGAGTCAAGCGTGCTCAGTGCAGATTTGCAGAGCCGGGGTGGAGACGAGGCCGATGACGAGCGCAGTGAGCTGATCAGCGAGGGACGACACatggagacagacagtgagacggAGTTTCCTGTTTTTATCAGAGGCGCCACGACTCCTGTTACCCCATCCAAGATCGTCCCTAGAAGTTCAGAGTGTACTAATGTTCAAAAGCCTTTAAACCGCTACATCCTGCCGTCACAAAGGCTGACTGCATTCAATACGTTGTCCAAGAGGCTGTCCTTGCACCAGAAGACAGACAGCGAATCGTCATTAGAAGTTGGAGCCAACCGAGAGGGTGAGAGGATGAGCCGAAGCGAACCGAGCCGTCTATCTCGCGTTCTGGAAGCAGTGAAAAAAGGGCGCTCTGTGGGAAGCCTTAGCTCCgcctcttcctcctcccatGGCCAGACAGAACCAACAAAGCGCTTGAGTATCACCGAGAGGTTGAAGTCCCACTTCCGCTTGTCTGCAGACGATATGTTTGGGATTGGAGGGCACAAAAATagcaggaagaaagagaaaagagtcCGTCGGAGACACACTGTGGGTGGGCAGCGAGACTTTGGAGAACTTGCAGTCATTAATGACTGGCGTGAACAGGGTGGTGCCgagaagggggcggagctttcaGACACGGACCGGCTCAAACTTCAAACCTCGAGAGAGATTTCCATTCGGGACTGGATCACCCGCGAGCGCTGGCATCCTGGGACTTCACGGGCTGGTTCAccggggtcaaaggtcatgaaGGGGACTGGCGAGGGTTCGAGTCGTCCTGCTTCTGTGCCAAGCTGCCAATCCACTGTGGATCGGTTGAATGGGGGGGAACCAAAGTGCAAAGGCAAAGCCAACCTGAACTCGGGTTCCGATGCTCACCCACATAAACTTTCCGGGGCTCAAGTTGTGCGCTCGCAGTTCTAccaatgtttataaaaatgtctgcatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgtatgAAACAAATGTGAGTGAAtgaaagaattaattaattaatgttcatAGAGGTACTGCACAatattttttatccttttaatcCCTTCTCCTCTTTTTaacaaagtatatatatatatataaatataaatatatataaatataaattgtatatatCTATGTGTGTATAGGCTCATAAGAGGACTAACTGGAGTAAAATGTATCAGATTTGAATTGTAATCTCAATTTTATGGATCAAAGTTGTTAAATTTTCCCTCCTGTAGTGGATTTGCCAAGACACATTTGGTGTCAGATGTTTGGTGACGGTGTCGCAGTGGTGCTAATGTAGCTTACAAGTAAGAGAAGTCTCTCATAAATCCCCAGGTAATAAAGTAATTTTATACAGACTGAGTGCAAGCCCCTGTAAAGATTATGCCATGttttaccttctataaaatgagCAGCAGAAATAACCCCAGGTGATATATATCCTGTCTGAATTGGCACGTTGGTAAAAACTGCATTCTATCCagtgggaaaagaggttttgcactttttctttagTATAAACTCACTCCAGGAAGTGCTTGCTCTTTTATCCCactgaaactaaaataaaaccgAGTTTAAAACACATAACAGAAAAATATTGAGGTGTCAAAAGGACGTGTCAGAGAAGCAATGTTTCCAGGGGTTTTAGGTAAACTACCAAGTTCCTAACATGGGTACAGCATGCATACGCTATGGTCACGTGATCAAATGCAACAAGCACTTATAGTACACATGGAATATTTAGTGTGACGAGAAATCACGTATCCCGTGTGAACGTCCTCCAGCAGCAACACTGAACAGGCAAATGTCGGGAAATGTAATCCCATCTGAATAGTACTTAAGAAAAATTCTGATTGTCCGTGATGGCGGCCCCCGCAATATTCCAGTGTTCAGCTACATGCTGAAGTTTAGTTCATGTTTCTAGATGACAGTAGTCCTACTGTGTCCTAACCCACATCAGCACATCTGTAGATACAACGTGGAGAAGATTTTGGTTGAGATAAACTTCCATGACTTGTTGGCTACATTTCCCATGACACTCCAGTGCAAAAACTAAAGACGCAAATGTCTCACAAGCACGTCTGGGTTGATCGACTACATTTGTGGTAAAGGTGAAATggtttacatttgattttttttttgctgaaattttaGAAGACAGTACTGGAAAGGATGTTGTGGTTAAGGTCTTCTCCTGAAACCCCAGTAATATGAAGTCTTTAGACGATATAAAGAACATACAATACAACCAATGTTGTATATCTTACCACCAGATTTCCTGATTGTAAGACTTGTTTTTTAGCCCTCTAGCATGTGCAAAGCATGTTCTTGTGCCCATTTGTTAGAGTGTTTATGGTAGGAGTGCTACTCCAGCAATTACGGTGAGGTTACATGAAGATGCACCACTGTTAGCGTAGAAAATCCCATAGCCACTCTggaaaaaatgagcaaatgagCATTTTGGTAAGGGTAAGGACTACAGAAGGAAACAACACAGCACTAAATTATGACAACACTaaccctacgttcacactagcaagtatCGAGTCACTTGTGTAACTTGTAGtttgtcgcttgtgggcgttgcctgtccagcatttttttttcctagttgtGCGAAATGTTTGTAGCTATACATAGCTTCTACAGCTGAATAGttacacacaaattaaataatgtgttaatcagtgtgaaaatccgTTTACATAATGGTACATGCTTAGCTTTGTACTAGCGTCCTTagcagattagattagcaaagcgagctaactaTACAAGCTATGTACActctataaacatttaatgagaggtcatatATGACAGGACAAAATGGAACCATGGTTATAaggttttcttccttttttgtgcATCAGACAGTAAGCAGGAACTCATTGCAGGTAGGAAGTAAAGTCGTTAGCTGGGACCTGAAGAAACGTCAtggaggaatcattcgagccagCCATTTTGATCTGCTGCTTTACAGCGTCACACATAATTTGcgtagaattgagaaaatccaTGTTCAACTCTCTGTGAAATCGTCGCTCTGTGTCGCTTgacgcttgctagtgtgaacgtagggtgATGGGATAAACACTAAACTAGATTACAATAGTGGGAGTGTTTAAAGGACAaacattaatgtgaaaaaagCCTTCCTTgagattttttatattattctgAAGGTGAAGTCCACGTCAGGAATtgttctctgtgctgtgtgctgtggaaagctctttttttttttacagtgcaatGAAGCAGCCAGGCGTCACGAAGCGTCGAAGCGAGAATGAAGtcaatttatatttctatatataggAATATAAAAAAGACAGAGCCTTTATACTGGTACTACAGGAAGTGCTAAGCATTAAAGTCACACAAAGTCATGTCTGTCTGTAATGAAGTGCCTCGTACAGCTAATCTCTGGTACaggaacttttttcttttaaagaactGTTGCTCTTGTCTAATGTTGCAAATTTTTATCACCAACTCCAAATGTGATCTAGATTTTTGTACGAAACAATGTGACCGCAAACCAGTGCTTCCAGTCTTATCTCATCTTTCATTTTGTTACTGGTCcatgatatatttttacatgCACATGTTGATATATTGAGATGGTAATGTCTGGGTCCGAGGTTGGACAGactgaggaagtgtgtgtgcatgacatAAACTGATGCATGTGTGATGACCAAAATGCtacacaaaaaagagagaaggttAAAAACACTGGAAATAAATTGTCTTTTTGAGA

Function

symbol description
arhgap21 Predicted to enable GTPase activator activity. Involved in several processes, including establishment of Golgi localization; maintenance of Golgi location; and organelle transport along microtubule. Located in several cellular components, including Golgi apparatus; actin cytoskeleton; and cell junction.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: rho GTPase-activating protein 21

GO: NA

KEGG:

id description
K20315 ARHGAP21_23; Rho GTPase-activating protein 21/23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947923.2 True 8510 mRNA 0.48 27 32115502 32187493

Neighbor

gene id symbol gene type direction distance location
trnar-ccg_2 NA coding downstream 28953 32086477 ~ 32086549 (-)
trnar-ucg NA coding downstream 29701 32085729 ~ 32085801 (-)
trnar-ccg_1 NA coding downstream 36887 32078543 ~ 32078615 (-)
trnar-ccg NA coding downstream 96335 32019095 ~ 32019167 (-)
arhgap29a arhgap29 coding downstream 124454 31932469 ~ 31991048 (-)
trnar-ccg_3 NA coding upstream 20132 32207625 ~ 32207697 (-)
prtfdc1a prtfdc1,unm_sa821,LOC107755703,LOC107588087,LOC107664644 coding upstream 32402 32219895 ~ 32237813 (-)
enkur enkur coding upstream 51447 32238940 ~ 32245611 (-)
LOC113547553 NA coding upstream 334127 32521620 ~ 32539347 (-)
LOC113547549 NA coding upstream 375044 32562537 ~ 32575431 (-)
G17631 NA non-coding downstream 17724 32053783 ~ 32097778 (-)
G17498 NA non-coding downstream 216746 31898557 ~ 31898756 (-)
G17441 NA non-coding downstream 296865 31818258 ~ 31818637 (-)
G17426 NA non-coding downstream 369371 31743216 ~ 31746131 (-)
G17425 NA non-coding downstream 376053 31737829 ~ 31739449 (-)
G17850 NA non-coding upstream 166367 32353860 ~ 32354074 (-)
LOC117597779 NA non-coding upstream 167703 32355196 ~ 32357754 (-)
G18087 NA non-coding upstream 351261 32538754 ~ 32608561 (-)
G18133 NA non-coding upstream 453862 32641355 ~ 32645315 (-)
G18136 NA non-coding upstream 462731 32650224 ~ 32650785 (-)
G17630 LOC108267341 other downstream 62948 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 503530 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1100853 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 1112193 31002409 ~ 31003309 (-)
G16900 NA other downstream 1472528 30640698 ~ 30642974 (-)
G18097 ift140 other upstream 402409 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 712376 32899869 ~ 32955703 (-)
G18432 NA other upstream 1383886 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 1385260 33572753 ~ 33616366 (-)
G18848 NA other upstream 1827555 34015048 ~ 34037333 (-)

Expression


Co-expression Network