prtfdc1a (prtfdc1,unm_sa821,LOC107755703,LOC107588087,LOC107664644)


Basic Information

Item Value
gene id prtfdc1a
gene name prtfdc1,unm_sa821,LOC107755703,LOC107588087,LOC107664644
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32219895 ~ 32237813 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947943.2
acacacacacacacacagccacgtGCTCCTGCTCTATCATACACCACCAATCATTTCATTACTGCAGAATGAACATTGTGAGGAACGCTTTGCCTCATGCGGGACGTTTACGGAGATCTGGACTGTGGAGGATTCCTCTGCTTCatcctgtgtgtctgtttacTTTTTCCTACTGAAGTGGATTCTTCCTGTAACCAGACACGTGATGGAGGACGGACGGAAAGACCAGGCTGTGGTGATAGCAGATGATTGGCCAGGTTATGAATTAGAGCTGTTCATGTATCCGGAGCATTACCGTGATGATGTGGAGAGTGTGTACATCCCACATGGCGTCATCATGAACAGGATCGAGTGTTTAGCCAGAGATATCCTGGAGGACATGGGGCATGATAACCTGATGgttctgtgtgttctgaaaGGAGGCTATAAGTTCTGCGCTGACCTGGTGGAATCTGTTAAAGCCCAAAGCCAGAGCTCTGATCGCCCCATCACCACCCGCGTGGAGTTCATCCGCCTCAAGAGCTACCTGAACGACCGCTCCACTGAAGACCTGCACATCATCGGCCCTGAGGATCTCTCCATGCTGAAAGGAAAAAATGTCCTGATTGTTGAGGCGATAGTGGACACGGGGAAGACCATGAAGATGCTCCTGAAGCATGTGGAGAAGTTCCAGCCCAAGACTGTCAAAGTGGCCGGcTTGCTGGTAAAGCGGATTCCCGGCGGAGCTACAAAGCTTCCAGACTATGTTGGATTTGTCATCCCTGATCGCTTCGTTGTTGGTTACGCTCTGGACTACAACGAATACTTCCGAGACCTGAACcacatCTGTGTGATCAGTGAAAGGGGGAAGCTGAAGTATAAGTTGTGAGAAACAGGCATTTTACCAGGGTTTGTTCTCGTCTCACATTGATATAGCACTTCAAACTAACAAAAGCTCATTGTGGCGTATCTGTCATGaggtttttgtaattttgtgaaAAGGTAAATTCACTGTGGACTGTATTCAGAGTCGACCTATGTGCATATAGTggggatttaatactgaaatgacacacactgttacTCAGTTttcagatgtaactacagacttaagtgcGATTCAGAGGTTGCGTGAAAGTTATGCATGCAgagggcggagtttgtctaaatcggaggcgtgtctcagtttcATGTGATTCTGATCTTGAACTTAAGAGCTTTTTTTCTTCCATGATATCATCCCGAGTGAGGAGCAGGTGTAAGTCCAGCGCCACTATCTGATAGTTTGATGTAACTACAATATGTCACGCTGAAAAGTATgatttggctgtaaatacactcaaaaacaaaattttaatttttaattttatattaaaaattaaagtcaCATAGCTCATATCAGTGGAGACAGATCTGAATCAGACACCCTGTTTATCCTGAGCACTGAAttatttatggataaaattatgaacaacactTAAAGCGAGCTGTGAGTGCAGCAGAAgagtcagcttatccttcaaacccaTGGCacattatttttaagaaaagtgCATCAAAttaatacaaggaactttccccacAAAAATACTGACTTCACTTTTGAACTTACATCACTGACTCCTGAATACAGCCCAGGATTTTGCATTTTGGTGGTTTTATTAagttttatatcatttataatatttcttgtcaggttttgctgtgaatgatttaatgtcatattaatagaataataatgatacagcaaaataaaaaaagatggcCAAACATTCAAACACTTCTCTGTGAAGGAGCCTTTATTTGGGATTCTTATCATACTGGACCTCGTAAAATGCTgatttattgttgttattaccGAGAGTTCTGTGGAAATTTATTGCCAAAACACAAGGCTATGAGATAAAGTGATAAATACAGTCAGGGCTGATGTGGCCCTCAGAAACTTCCTTCAAATATCTGGTTGTCTGCTTAACTTCAGCTCTATTATAAACAATCGGATTAAATAGCCTGTCTTTTCCTTGAAAGTAAAGATGAGGAAATATAATTTTGCCAAGATCAGTGCTGAAGAACATCAAATCAACTTTCATTAAATAtctacagtgccttgcaaaagtattcacccccctttgcctttttcctattttgttgcattacaacctggaatttaaAGGCTTTTCATTTGGCTTTTATGTAGTGGATCTATGCAAAATAC
>XM_034300539.1
cgttattgtttctatagtaacagctcgttcacagggatgtgtacagAGATAGCAGATGATTGGCCAGGTTATGAATTAGAGCTGTTCATGTATCCGGAGCATTACCGTGATGATGTGGAGAGTGTGTACATCCCACATGGCGTCATCATGAACAGGATCGAGTGTTTAGCCAGAGATATCCTGGAGGACATGGGGCATGATAACCTGATGgttctgtgtgttctgaaaGGAGGCTATAAGTTCTGCGCTGACCTGGTGGAATCTGTTAAAGCCCAAAGCCAGAGCTCTGATCGCCCCATCACCACCCGCGTGGAGTTCATCCGCCTCAAGAGCTACCTGAACGACCGCTCCACTGAAGACCTGCACATCATCGGCCCTGAGGATCTCTCCATGCTGAAAGGAAAAAATGTCCTGATTGTTGAGGCGATAGTGGACACGGGGAAGACCATGAAGATGCTCCTGAAGCATGTGGAGAAGTTCCAGCCCAAGACTGTCAAAGTGGCCGGcTTGCTGGTAAAGCGGATTCCCGGCGGAGCTACAAAGCTTCCAGACTATGTTGGATTTGTCATCCCTGATCGCTTCGTTGTTGGTTACGCTCTGGACTACAACGAATACTTCCGAGACCTGAACcacatCTGTGTGATCAGTGAAAGGGGGAAGCTGAAGTATAAGTTGTGAGAAACAGGCATTTTACCAGGGTTTGTTCTCGTCTCACATTGATATAGCACTTCAAACTAACAAAAGCTCATTGTGGCGTATCTGTCATGaggtttttgtaattttgtgaaAAGGTAAATTCACTGTGGACTGTATTCAGAGTCGACCTATGTGCATATAGTggggatttaatactgaaatgacacacactgttacTCAGTTttcagatgtaactacagacttaagtgcGATTCAGAGGTTGCGTGAAAGTTATGCATGCAgagggcggagtttgtctaaatcggaggcgtgtctcagtttcATGTGATTCTGATCTTGAACTTAAGAGCTTTTTTTCTTCCATGATATCATCCCGAGTGAGGAGCAGGTGTAAGTCCAGCGCCACTATCTGATAGTTTGATGTAACTACAATATGTCACGCTGAAAAGTATgatttggctgtaaatacactcaaaaacaaaattttaatttttaattttatattaaaaattaaagtcaCATAGCTCATATCAGTGGAGACAGATCTGAATCAGACACCCTGTTTATCCTGAGCACTGAAttatttatggataaaattatgaacaacactTAAAGCGAGCTGTGAGTGCAGCAGAAgagtcagcttatccttcaaacccaTGGCacattatttttaagaaaagtgCATCAAAttaatacaaggaactttccccacAAAAATACTGACTTCACTTTTGAACTTACATCACTGACTCCTGAATACAGCCCAGGATTTTGCATTTTGGTGGTTTTATTAagttttatatcatttataatatttcttgtcaggttttgctgtgaatgatttaatgtcatattaatagaataataatgatacagcaaaataaaaaaagatggcCAAACATTCAAACACTTCTCTGTGAAGGAGCCTTTATTTGGGATTCTTATCATACTGGACCTCGTAAAATGCTgatttattgttgttattaccGAGAGTTCTGTGGAAATTTATTGCCAAAACACAAGGCTATGAGATAAAGTGATAAATACAGTCAGGGCTGATGTGGCCCTCAGAAACTTCCTTCAAATATCTGGTTGTCTGCTTAACTTCAGCTCTATTATAAACAATCGGATTAAATAGCCTGTCTTTTCCTTGAAAGTAAAGATGAGGAAATATAATTTTGCCAAGATCAGTGCTGAAGAACATCAAATCAACTTTCATTAAATAtctacagtgccttgcaaaagtattcacccccctttgcctttttcctattttgttgcattacaacctggaatttaaAGGCTTTTCATTTGGCTTTTATGTAGTGGATCTATGCAAAATAC

Function

symbol description
prtfdc1 Enables protein homodimerization activity. Predicted to be involved in purine ribonucleoside salvage.

NR:

description
hypoxanthine-guanine phosphoribosyltransferase-like isoform X1

GO: NA

KEGG:

id description
K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947943.2 True 2194 mRNA 0.41 9 32219895 32237813
XM_034300539.1 False 2004 mRNA 0.40 9 32219895 32237434

Neighbor

gene id symbol gene type direction distance location
trnar-ccg_3 NA coding downstream 12198 32207625 ~ 32207697 (-)
LOC113547543 arhgap21,LOC107570046 coding downstream 32402 32115502 ~ 32187493 (-)
trnar-ccg_2 NA coding downstream 133346 32086477 ~ 32086549 (-)
trnar-ucg NA coding downstream 134094 32085729 ~ 32085801 (-)
trnar-ccg_1 NA coding downstream 141280 32078543 ~ 32078615 (-)
enkur enkur coding upstream 1127 32238940 ~ 32245611 (-)
LOC113547553 NA coding upstream 283807 32521620 ~ 32539347 (-)
LOC113547549 NA coding upstream 324724 32562537 ~ 32575431 (-)
tmem204 tmem204 coding upstream 372206 32610019 ~ 32622734 (-)
fam234a fam234a coding upstream 449784 32687597 ~ 32696711 (-)
G17631 NA non-coding downstream 122117 32053783 ~ 32097778 (-)
G17498 NA non-coding downstream 321139 31898557 ~ 31898756 (-)
G17441 NA non-coding downstream 401258 31818258 ~ 31818637 (-)
G17426 NA non-coding downstream 473764 31743216 ~ 31746131 (-)
G17425 NA non-coding downstream 480446 31737829 ~ 31739449 (-)
G17850 NA non-coding upstream 116047 32353860 ~ 32354074 (-)
LOC117597779 NA non-coding upstream 117383 32355196 ~ 32357754 (-)
G18087 NA non-coding upstream 300941 32538754 ~ 32608561 (-)
G18133 NA non-coding upstream 403542 32641355 ~ 32645315 (-)
G18136 NA non-coding upstream 412411 32650224 ~ 32650785 (-)
G17630 LOC108267341 other downstream 167341 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 607923 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1205246 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 1216586 31002409 ~ 31003309 (-)
G16900 NA other downstream 1576921 30640698 ~ 30642974 (-)
G18097 ift140 other upstream 352089 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 662056 32899869 ~ 32955703 (-)
G18432 NA other upstream 1333566 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 1334940 33572753 ~ 33616366 (-)
G18848 NA other upstream 1777235 34015048 ~ 34037333 (-)

Expression


Co-expression Network