LOC117597388


Basic Information

Item Value
gene id LOC117597388
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32958621 ~ 32972206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304680.1
TGTAGACCTGCCTTTAGTTGGCGCGTGTGCAGGTCTTCAACGTGGCAGGAGCTTCAGAAGAGTGCAGCACTGTTTAATGTATCTCACTTTACTACACTTTATCTAACACTTGGTTTGTATGCAAGCGATGAGCGAGTATTTGCGCTACTTCCGGTTCCGTGAGCGCGTGCTTTGTGGTGTTTGAGTGCATGTTGGCTTAATATCGTGGTGGATTTCCGCAGCTGGTGACCCGGGAGAGGAACTACAGGCAGAAGAACAAAGACACGCTGGGAGTCTCAGATACACAGAAGATGAGCTCAGAAAAACCACCATTACCAGAAAATGGCGTGGAGGTGGGGCAGGAGGCGGGGCCTGTGGCAGTTCCTGAAGCCCCATTGGACAGCGTGCGTGATGGGTGGGATAGTAAAGTGGAGTATTTCCTGGCTCAGGTGGGATTCAGTGTTGGACTCGGAAACGTGTGGAGATTCCCCTACCTGTGTCACCAGAAcggaggaggagcaTTCCTGCTGCTCTACATtgtgttgatggtggtggtCGGTGTGCCGTTGTTTTTCCTCGAGCTGGCGGTGGGTCAGAGCATCAGACAGGGCAGCATCGGCGTCTGGAGACACATCTCACCAAAACTTGTCGGGATTGGCTACTCCAGCTGTGTGgtgTGTTCCTTTGTGGCGCTGTATTATAACGTAATCATCGGCTGGAgtattttttatctctttaaatCGTTCCAGAGTCCGTTACCCTGGGAGAACTGTCCTAAAGAGGGGAACgccacagtacgtGAGTGTGCTGCGAGTTCTCCTACATCGTACTTCTGGTTCCGTAAAGCTCTGGATATTACGGACTCTATTGATGAGACAGGAGAGTTTAACCTGATCATCACCGGCTGTCTCGTTCTCGCCTGGACCATCGTCTGTCTCGCCATGTTCAAGGGCATCAAGTCTTCTGgcaagGTGATGTATTTCTCCTCCCTGTTCCCGTACGTGGTTCTGCTGTGTTTCCTGATTCGAGGTCTCACGCTGGACGGAGCAGCAGAGGGACTGAAGTACATGTTCAGTCCAAGGTTGGATGTGGAGGGTGATATACAGGTGTGGCGTCAGGCATTCACTCAGGTGTTCTTTGCTCTGGGTTTGGGTTTTGGCTCCATCATAGCGTACTCCTCCTACAACCAGCGCAATAATAACTGTCACCGTGACGCCATCACCGTTTCCACCATCAACTTCCTCACCTCCATCCTCGCCTCGCTCGTCGTCTTCTCTGTGCTGGGCTTCAGGGCCAAGACCTTCACCAAGACCTGCATCTCACAgaatctgaagctgttATCTGAAGGCGATTTCGTCCTCTGTTACTCCACCCCTCTTCTCATTAACATATCCGGGCCGAGTCTATTTCCGTGGAGATGTATAAGCGCTGAAATGCGGCGTGCAGGGCAATCAGCTGAACCTCACCCGGCTACATCATCAGCAACTGCAGCCTGGAGGGGCGCCATGAACAAAGTACCTATAGATTATATCTCGTTTATCGCCATGAACAAAAGTACCTATAGATTATATCGTTTATCGCCATGA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304680.1 True 1565 mRNA 0.51 8 32958621 32972206

Neighbor

gene id symbol gene type direction distance location
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding downstream 4690 32923867 ~ 32953931 (-)
ccdc78 LOC108269459 coding downstream 62771 32876470 ~ 32895850 (-)
fam234a fam234a coding downstream 261910 32687597 ~ 32696711 (-)
tmem204 tmem204 coding downstream 335887 32610019 ~ 32622734 (-)
LOC113547549 NA coding downstream 383190 32562537 ~ 32575431 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 278641 33250847 ~ 33284417 (-)
fgf21 LOC108263130 coding upstream 347658 33319864 ~ 33326553 (-)
LOC117597600 LOC108261633,LOC108268894,LOC108273545,LOC108263642,LOC108270753,LOC108263117,LOC108410737,LOC108261292,LOC108412218 coding upstream 456718 33428924 ~ 33453389 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 489572 33461778 ~ 33472267 (-)
LOC117595708 LOC108263642,LOC108270747,LOC108274210,LOC108273544,LOC108273692,LOC108270753,LOC108261406 coding upstream 527078 33499284 ~ 33506987 (-)
G18170 LOC108268894,LOC108263117,LOC108273545,LOC108273546,LOC108261282,LOC108270753 non-coding downstream 7279 32943736 ~ 32951342 (-)
LOC117597511 NA non-coding downstream 13617 32943960 ~ 32945004 (-)
G18176 NA non-coding downstream 15485 32923002 ~ 32943136 (-)
G18157 ptx4 non-coding downstream 150355 32799683 ~ 32808266 (-)
G18110 NA non-coding downstream 229583 32684517 ~ 32729038 (-)
G18182 NA non-coding upstream 8869 32981075 ~ 32981310 (-)
G18197 LOC108273185 non-coding upstream 41574 33013780 ~ 33061512 (-)
G18224 NA non-coding upstream 161102 33133308 ~ 33133510 (-)
G18231 NA non-coding upstream 178054 33150260 ~ 33150876 (-)
G18275 LOC108277266 non-coding upstream 200100 33172306 ~ 33172879 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 2918 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 361816 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 906067 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1346649 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1943972 30988123 ~ 31014649 (-)
G18432 NA other upstream 599173 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 600547 33572753 ~ 33616366 (-)
G18848 NA other upstream 1042842 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1294098 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 1311860 34284066 ~ 34998396 (-)

Expression


Co-expression Network