LOC117597779


Basic Information

Item Value
gene id LOC117597779
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32355196 ~ 32357754 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578529.1
catccatccatccatactgcttatcctgcaCATGGTCAGGGGGGAGTCTGGGGCCTGTCCGAGGGAACCCGGGGCACAAGACTGGGGGAGGAACCTGGAGTACCTGGATGAAACCCCgaagcacaggaagaacatgcaagctctgcacacacagggtggaggaagaattcaaacccccaaccttggaggtgtgaggcaacagtggaTCATATCTGATTCAAGAGAAACGACTTCAATCTTCTTCAGCCAGAGAGTCTGATCGCTTCCCTCATCACAACAGCTGTTCTTCGTCTCAAACCTGGATAGAGTGTGTTTCCCAAAGCTCCTCGCATCTGCACCCCTTCAGCAACTTTCAAAAAAAGATTTGCCTAGCGAAAAATCTTTTTTGATGAGCAGATGTTAACTGCTGGTTATACAAgttgatcaccattgtttcctaaaaccaatcactgattgcCATTGTTCCCtaaaaccaatcact

Function

GO:

id name namespace
GO:0060216 definitive hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578529.1 True 481 lncRNA 0.48 3 32355196 32357754

Neighbor

gene id symbol gene type direction distance location
enkur enkur coding downstream 109585 32238940 ~ 32245611 (-)
prtfdc1a prtfdc1,unm_sa821,LOC107755703,LOC107588087,LOC107664644 coding downstream 117383 32219895 ~ 32237813 (-)
trnar-ccg_3 NA coding downstream 147499 32207625 ~ 32207697 (-)
LOC113547543 arhgap21,LOC107570046 coding downstream 167703 32115502 ~ 32187493 (-)
trnar-ccg_2 NA coding downstream 268647 32086477 ~ 32086549 (-)
LOC113547553 NA coding upstream 163866 32521620 ~ 32539347 (-)
LOC113547549 NA coding upstream 204783 32562537 ~ 32575431 (-)
tmem204 tmem204 coding upstream 252265 32610019 ~ 32622734 (-)
fam234a fam234a coding upstream 329843 32687597 ~ 32696711 (-)
ccdc78 LOC108269459 coding upstream 518716 32876470 ~ 32895850 (-)
G17850 NA non-coding downstream 1122 32353860 ~ 32354074 (-)
G17631 NA non-coding downstream 257418 32053783 ~ 32097778 (-)
G17498 NA non-coding downstream 456440 31898557 ~ 31898756 (-)
G17441 NA non-coding downstream 536559 31818258 ~ 31818637 (-)
G17426 NA non-coding downstream 609065 31743216 ~ 31746131 (-)
G18087 NA non-coding upstream 181000 32538754 ~ 32608561 (-)
G18133 NA non-coding upstream 283601 32641355 ~ 32645315 (-)
G18136 NA non-coding upstream 292470 32650224 ~ 32650785 (-)
G18110 NA non-coding upstream 326763 32684517 ~ 32729038 (-)
G18143 NA non-coding upstream 349702 32707456 ~ 32708126 (-)
G17630 LOC108267341 other downstream 302642 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 743224 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1340547 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 1351887 31002409 ~ 31003309 (-)
G16900 NA other downstream 1712222 30640698 ~ 30642974 (-)
G18097 ift140 other upstream 232148 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 542115 32899869 ~ 32955703 (-)
G18432 NA other upstream 1213625 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 1214999 33572753 ~ 33616366 (-)
G18848 NA other upstream 1657294 34015048 ~ 34037333 (-)

Expression


Co-expression Network