trnar-ccg_1


Basic Information

Item Value
gene id trnar-ccg_1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32078543 ~ 32078615 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccg_1
GGCccagtggcctaatggataaggCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCAAGTCCCACCTGGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccg_1 True 73 tRNA 0.62 1 32078543 32078615

Neighbor

gene id symbol gene type direction distance location
trnar-ccg NA coding downstream 59376 32019095 ~ 32019167 (-)
arhgap29a arhgap29 coding downstream 87495 31932469 ~ 31991048 (-)
prmt6 prmt6 coding downstream 751086 31325914 ~ 31327457 (-)
ntng1a ntng1,LOC102781425 coding downstream 766507 31166426 ~ 31312036 (-)
LOC113547558 LOC108268894,LOC108264971,LOC108273546,LOC108270747,LOC108257668,LOC108270753 coding downstream 1095628 30970017 ~ 30982915 (-)
trnar-ucg NA coding upstream 7114 32085729 ~ 32085801 (-)
trnar-ccg_2 NA coding upstream 7862 32086477 ~ 32086549 (-)
LOC113547543 arhgap21,LOC107570046 coding upstream 36887 32115502 ~ 32187493 (-)
trnar-ccg_3 NA coding upstream 129010 32207625 ~ 32207697 (-)
prtfdc1a prtfdc1,unm_sa821,LOC107755703,LOC107588087,LOC107664644 coding upstream 141280 32219895 ~ 32237813 (-)
G17498 NA non-coding downstream 179787 31898557 ~ 31898756 (-)
G17441 NA non-coding downstream 259906 31818258 ~ 31818637 (-)
G17426 NA non-coding downstream 332412 31743216 ~ 31746131 (-)
G17425 NA non-coding downstream 339094 31737829 ~ 31739449 (-)
G17421 NA non-coding downstream 350314 31721110 ~ 31728229 (-)
G17850 NA non-coding upstream 275245 32353860 ~ 32354074 (-)
LOC117597779 NA non-coding upstream 276581 32355196 ~ 32357754 (-)
G18087 NA non-coding upstream 460139 32538754 ~ 32608561 (-)
G18133 NA non-coding upstream 562740 32641355 ~ 32645315 (-)
G18136 NA non-coding upstream 571609 32650224 ~ 32650785 (-)
G17630 LOC108267341 other downstream 25989 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 466571 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1063894 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 1075234 31002409 ~ 31003309 (-)
G16900 NA other downstream 1435569 30640698 ~ 30642974 (-)
G18097 ift140 other upstream 511287 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 821254 32899869 ~ 32955703 (-)
G18432 NA other upstream 1492764 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 1494138 33572753 ~ 33616366 (-)
G18848 NA other upstream 1936433 34015048 ~ 34037333 (-)

Expression


Co-expression Network