trnar-ccg_2


Basic Information

Item Value
gene id trnar-ccg_2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32086477 ~ 32086549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccg_2
GGCccagtggcctaatggataaggCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCAAGTCCCACCTGGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccg_2 True 73 tRNA 0.62 1 32086477 32086549

Neighbor

gene id symbol gene type direction distance location
trnar-ucg NA coding downstream 676 32085729 ~ 32085801 (-)
trnar-ccg_1 NA coding downstream 7862 32078543 ~ 32078615 (-)
trnar-ccg NA coding downstream 67310 32019095 ~ 32019167 (-)
arhgap29a arhgap29 coding downstream 95429 31932469 ~ 31991048 (-)
prmt6 prmt6 coding downstream 759020 31325914 ~ 31327457 (-)
LOC113547543 arhgap21,LOC107570046 coding upstream 28953 32115502 ~ 32187493 (-)
trnar-ccg_3 NA coding upstream 121076 32207625 ~ 32207697 (-)
prtfdc1a prtfdc1,unm_sa821,LOC107755703,LOC107588087,LOC107664644 coding upstream 133346 32219895 ~ 32237813 (-)
enkur enkur coding upstream 152391 32238940 ~ 32245611 (-)
LOC113547553 NA coding upstream 435071 32521620 ~ 32539347 (-)
G17498 NA non-coding downstream 187721 31898557 ~ 31898756 (-)
G17441 NA non-coding downstream 267840 31818258 ~ 31818637 (-)
G17426 NA non-coding downstream 340346 31743216 ~ 31746131 (-)
G17425 NA non-coding downstream 347028 31737829 ~ 31739449 (-)
G17421 NA non-coding downstream 358248 31721110 ~ 31728229 (-)
G17850 NA non-coding upstream 267311 32353860 ~ 32354074 (-)
LOC117597779 NA non-coding upstream 268647 32355196 ~ 32357754 (-)
G18087 NA non-coding upstream 452205 32538754 ~ 32608561 (-)
G18133 NA non-coding upstream 554806 32641355 ~ 32645315 (-)
G18136 NA non-coding upstream 563675 32650224 ~ 32650785 (-)
G17630 LOC108267341 other downstream 33923 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 474505 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1071828 30988123 ~ 31014649 (-)
G17199 telo2 other downstream 1083168 31002409 ~ 31003309 (-)
G16900 NA other downstream 1443503 30640698 ~ 30642974 (-)
G18097 ift140 other upstream 503353 32589902 ~ 32596805 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other upstream 813320 32899869 ~ 32955703 (-)
G18432 NA other upstream 1484830 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 1486204 33572753 ~ 33616366 (-)
G18848 NA other upstream 1928499 34015048 ~ 34037333 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ccg-22 NA coding NC_048575.1 CM023229.2 34763488 ~ 34763560 (+)
eurasian perch (Perca fluviatilis) trnag-ucc_39 NA non-coding NC_053133.1 CM020930.1 3202707 ~ 3202778 (+)
eurasian perch (Perca fluviatilis) trnar-ccg_3 NA coding NC_053133.1 CM020930.1 18624726 ~ 18624798 (-)
tiger barb (Puntius tetrazona) trnam-cau_88 NA misc NC_056707.1 CM032076.1 5440591 ~ 5440662 (+)
tiger barb (Puntius tetrazona) trnar-ccg_26 NA misc NC_056706.1 CM032075.1 10540219 ~ 10540291 (-)
mexican tetra (Astyanax mexicanus) trnar-ccg_25 NA coding NC_035921.1 CM008324.1 21065169 ~ 21065241 (-)