hspbap1 (hspbap1,LOC108261044,LOC107596081)


Basic Information

Item Value
gene id hspbap1
gene name hspbap1,LOC108261044,LOC107596081
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12713065 ~ 12728037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU96948
TGTGTGGCCTTTACTGATACGACGACCTCCGTCCTGGCAGAGCCCGAATGGCTGGAGTTTCTCTTCCCGTccgattttttctttttttttaaaccgttGTTAGCTCTCACGTGAGTTTGTTTACAAGGCCAAATGAGAACAGAGAGTACTTTTGCGCTTTTCTGGGAGGCTGAGTGAACGTCCGCATGTCTAGCTGCTAGCTACATTTGACCTCTGCAGATATGGCCACTAAACCCTTCAGGCCAGAGGAAGCACGCAGGATCATGCAATTTCTGCACAGGCCAGCAGTTTTCCTCAACATGACTGATAACTGGCCAGGACGGGACTGGACTTTGGAACATCTGGCACTTTGTCTAGAGGAGAAAACTGTACGTTTTCGTATTGGGAAGCGGTGTGAACAGAAGGCTCCTCTCTTTGAGACAGAGTGCTCATATGTCGAAGCAACTCTTGCAGAGTTTCTCTGTTGGACGAGGGGAAGTGACGCTGCATCTGTAGGCCCATTTGCTGATTATCCCCTTTCAGAGTACTGGGCTTATGCAGACTACAAGTATATCGCCCTCCTTTTTCAGGACAAGACCACCATGTTTAAGGATGTATTGTGGTCTGACTTTGGCTATCCAGGCCGTGATGGGAGAGAGAGTACTCTATGGGTTGGTACAAATGGTGCTAACACTCCATGTCACCTGGACTCCTACGGATGCAATCTTGTCTTCCAAATTCAAGaAAACGCTGGCATCTCTTTCCTCCTGATGATACAGAATGTATGTACCCAACACGTATACCGTATGAGGAGTCGAGTGTGTTCAGCCAGGTCAACGTGATACGTCCTGACATGCACCGATTCCCTGCTTTCCGAAGAGCCAGGGCCCACCTCGTCACTCTGGAGCCGGGTCAGGTTCTTTTTGTCCCAAGACACTGGTGGCACTATGTGGAATCAGTAGATCCAGTAACTGTCAGTGTCAACTCTTGGATTGAGATGGAGGTGGATGATGAAGCCCGAATAGGAGAGGCTCTGACCAAAACCATCATCTGTGCATTAAAGACTAAACCAAGTGTGGATAACAAAGACAACTGGCTCAATCCTACTGAGGATGGGATCTCTACACATGATGAAAACATGCAGTACTTGAATCTAGCAGTGAAGGCTTACACGACTAAAAGGAGCTTACATTCTGAAGACTGGCTCACATGTGCAGAACAACCCAGTCCCTCTGCTTTGAAGCGGGACTCCAGTGGTCATTTGAAGACCCCTGTCACTGAGCCTGTGACCTCATTTTCATTGCCCTTTGGATCTCACCTCATTCCTGTTACTTGTCATGCAGACATGCCTCAGAAACCCACAATGACAAACCCCAAAGAGGCTCTCATTTCAAAAGACAATACActcttttacacacaaaaaagaacaaagccCCTGCATACAGATACACATGGGAAAGAAGAGGCAATCAGTGTatcagaggaggaagaagaagatggaAATGGTGGTGCAGTGTATGGGCGAATATCCACTAATGATGTGCTGGACTGCCTGCTACATCCTGATGTCATCGCCCTTGTTACAAAGCTAATgatagacagac
>TU96950
CAAAAACTTGATTCTGTGGTCATTGAATCATTTTTGCATGGAtttgttttgggtcattgtcctgctggaagatccaAACATGACCCAGTAAAACCATCCTTCTTTTTATGTAGGTTCCAAAGTTACAGTAGAGTCTAGTGAAATCCATGCACTTACATTTGTGTTGAGGTGGCACTGGCACATCTCCCAATTAGTATGTTGTCATATACAGTAGGTGGCATCTAattctacactatatggacaaaagtatgtggacacttgatcTTCATACCCAAATGTGGtcctttcccaaactgttgccacaaagttggaagcacacaattgtctagaatgtctttggatgctgtagcattacaatttactcagacctgttccagcatgaggTCAGTGAAGACAGGGTTTGCCagtgttggagtggaagaactcaagtggctgGCACAGAATCCTGAccacaaccccactgaacacctttgggatgaactgaaacactgactgcacaccaAGCCTTCTCACCCGACagcagtgtctgacctcactaatgctcttactGGCTGAAtaggcaaatccccacagccacactccaaaatctagtggaagggcttcacagaagagtggaggttattataacagcaaagggggactaaatctggaatgggatgttcaacaaacatcTATGGGTGTGATGTCCACATATATTTGGGCATATAGTGTAGATTTGATGACCTCAAAATGCCACCATCTTCTACAAATCTCCAACTGTGTTCCTTGGAGAAATTGCATGGCATTAGCCATCTAAGTtactaaaatgacatttttgaaaatgactGAGCTAATTTTGTCAATATTGTCTCttcctttaattttcattaGGTTCTTTTTGTCCCAAGACACTGGTGGCACTATGTGGAATCAGTAGATCCAGTAACTGTCAGTGTCAACTCTTGGATTGAGATGGAGGTGGATGATGAAGCCCGAATAGGAGAGGCTCTGACCAAAACCATCATCTGTGCATTAAAGACTAAACCAAGTGTGGATAACAAAGACAACTGGCTCAATCCTACTGAGGATGGGATCTCTACACATGATGAAAACATGCAGTACTTGAATCTAGCAGTGAAGGCTTACACGACTAAAAGGAGCTTACATTCTGAAGACTGGCTCACATGTGCAGAACAACCCAGTCCCTCTGCTTTGAAGCGGGACTCCAGTGGTCATTTGAAGACCCCTGTCACTGAGCCTGTGACCTCATTTTCATTGCCCTTTGGATCTCACCTCATTCCTGTTACTTGTCATGCAGACATGCCTCAGAAACCCACAATGACAAACCCCAAAGAGGCTCTCATTTCAAAAGACAATACActcttttacacacaaaaaagaacaaagccCCTGCATACAGATACACATGGGAAAGAAGAGGCAATCAGTGTatcagaggaggaagaagaagatggaAATGGTGGTGCAGTGTATGGGCGAATATCCACTAATGATGTGCTGGACTGCCTGCTACATCCTGATGTCATCGCCCTTGTTACAAAGCTAATgatagacagac
>XM_026912186.2
CCATGTTGGATCTGTGTGGCCTTTACTGATACGACGACCTCCGTCCTGGCAGAGCCCGAATGGCTGGAGTTTCTCTTCCCGTccgattttttctttttttttaaaccgttGTTAGCTCTCACGTGAGTTTGTTTACAAGGCCAAATGAGAACAGAGAGTACTTTTGCGCTTTTCTGGGAGGCTGAGTGAACGTCCGCATGTCTAGCTGCTAGCTACATTTGACCTCTGCAGATATGGCCACTAAACCCTTCAGGCCAGAGGAAGCACGCAGGATCATGCAATTTCTGCACAGGCCAGCAGTTTTCCTCAACATGACTGATAACTGGCCAGGACGGGACTGGACTTTGGAACATCTGGCACTTTGTCTAGAGGAGAAAACTGTACGTTTTCGTATTGGGAAGCGGTGTGAACAGAAGGCTCCTCTCTTTGAGACAGAGTGCTCATATGTCGAAGCAACTCTTGCAGAGTTTCTCTGTTGGACGAGGGGAAGTGACGCTGCATCTGTAGGCCCATTTGCTGATTATCCCCTTTCAGAGTACTGGGCTTATGCAGACTACAAGTATATCGCCCTCCTTTTTCAGGACAAGACCACCATGTTTAAGGATGTATTGTGGTCTGACTTTGGCTATCCAGGCCGTGATGGGAGAGAGAGTACTCTATGGGTTGGTACAAATGGTGCTAACACTCCATGTCACCTGGACTCCTACGGATGCAATCTTGTCTTCCAAATTCAAGGCAGaAAACGCTGGCATCTCTTTCCTCCTGATGATACAGAATGTATGTACCCAACACGTATACCGTATGAGGAGTCGAGTGTGTTCAGCCAGGTCAACGTGATACGTCCTGACATGCACCGATTCCCTGCTTTCCGAAGAGCCAGGGCCCACCTCGTCACTCTGGAGCCGGGTCAGGTTCTTTTTGTCCCAAGACACTGGTGGCACTATGTGGAATCAGTAGATCCAGTAACTGTCAGTGTCAACTCTTGGATTGAGATGGAGGTGGATGATGAAGCCCGAATAGGAGAGGCTCTGACCAAAACCATCATCTGTGCATTAAAGACTAAACCAAGTGTGGATAACAAAGACAACTGGCTCAATCCTACTGAGGATGGGATCTCTACACATGATGAAAACATGCAGTACTTGAATCTAGCAGTGAAGGCTTACACGACTAAAAGGAGCTTACATTCTGAAGACTGGCTCACATGTGCAGAACAACCCAGTCCCTCTGCTTTGAAGCGGGACTCCAGTGGTCATTTGAAGACCCCTGTCACTGAGCCTGTGACCTCATTTTCATTGCCCTTTGGATCTCACCTCATTCCTGTTACTTGTCATGCAGACATGCCTCAGAAACCCACAATGACAAACCCCAAAGAGGCTCTCATTTCAAAAGACAATACActcttttacacacaaaaaagaacaaagccCCTGCATACAGATACACATGGGAAAGAAGAGGCAATCAGTGTatcagaggaggaagaagaagatggaAATGGTGGTGCAGTGTATGGGCGAATATCCACTAATGATGTGCTGGACTGCCTGCTACATCCTGATGTCATCGCCCTTGTTACAAAGCTAATgatagacagacaaaaagagctTGACTAAACAAGTCAAGCAATTTTTTGCACTGTATTAACTTTACACATAAAATATTGTGGTTAATAAATACTTCATTGCtaataattattagtaataaatattaataataatttgaaagaaaaa
>XM_034304681.1
CCATGTTGGATCTGTGTGGCCTTTACTGATACGACGACCTCCGTCCTGGCAGAGCCCGAATGGCTGGAGTTTCTCTTCCCGTccgattttttctttttttttaaaccgttGTTAGCTCTCACTGACCTCTGCAGATATGGCCACTAAACCCTTCAGGCCAGAGGAAGCACGCAGGATCATGCAATTTCTGCACAGGCCAGCAGTTTTCCTCAACATGACTGATAACTGGCCAGGACGGGACTGGACTTTGGAACATCTGGCACTTTGTCTAGAGGAGAAAACTGTACGTTTTCGTATTGGGAAGCGGTGTGAACAGAAGGCTCCTCTCTTTGAGACAGAGTGCTCATATGTCGAAGCAACTCTTGCAGAGTTTCTCTGTTGGACGAGGGGAAGTGACGCTGCATCTGTAGGCCCATTTGCTGATTATCCCCTTTCAGAGTACTGGGCTTATGCAGACTACAAGTATATCGCCCTCCTTTTTCAGGACAAGACCACCATGTTTAAGGATGTATTGTGGTCTGACTTTGGCTATCCAGGCCGTGATGGGAGAGAGAGTACTCTATGGGTTGGTACAAATGGTGCTAACACTCCATGTCACCTGGACTCCTACGGATGCAATCTTGTCTTCCAAATTCAAGGCAGaAAACGCTGGCATCTCTTTCCTCCTGATGATACAGAATGTATGTACCCAACACGTATACCGTATGAGGAGTCGAGTGTGTTCAGCCAGGTCAACGTGATACGTCCTGACATGCACCGATTCCCTGCTTTCCGAAGAGCCAGGGCCCACCTCGTCACTCTGGAGCCGGGTCAGGTTCTTTTTGTCCCAAGACACTGGTGGCACTATGTGGAATCAGTAGATCCAGTAACTGTCAGTGTCAACTCTTGGATTGAGATGGAGGTGGATGATGAAGCCCGAATAGGAGAGGCTCTGACCAAAACCATCATCTGTGCATTAAAGACTAAACCAAGTGTGGATAACAAAGACAACTGGCTCAATCCTACTGAGGATGGGATCTCTACACATGATGAAAACATGCAGTACTTGAATCTAGCAGTGAAGGCTTACACGACTAAAAGGAGCTTACATTCTGAAGACTGGCTCACATGTGCAGAACAACCCAGTCCCTCTGCTTTGAAGCGGGACTCCAGTGGTCATTTGAAGACCCCTGTCACTGAGCCTGTGACCTCATTTTCATTGCCCTTTGGATCTCACCTCATTCCTGTTACTTGTCATGCAGACATGCCTCAGAAACCCACAATGACAAACCCCAAAGAGGCTCTCATTTCAAAAGACAATACActcttttacacacaaaaaagaacaaagccCCTGCATACAGATACACATGGGAAAGAAGAGGCAATCAGTGTatcagaggaggaagaagaagatggaAATGGTGGTGCAGTGTATGGGCGAATATCCACTAATGATGTGCTGGACTGCCTGCTACATCCTGATGTCATCGCCCTTGTTACAAAGCTAATgatagacagacaaaaagagctTGACTAAACAAGTCAAGCAATTTTTTGCACTGTATTAACTTTACACATAAAATATTGTGGTTAATAAATACTTCATTGCtaataattattagtaataaatattaataataatttgaaagaaaaa

Function

symbol description
hspbap1 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human HSPBAP1 (HSPB1 associated protein 1).

NR:

description
HSPB1-associated protein 1 homolog

GO: NA

KEGG:

id description
K19375 HSPBAP1; HSPB1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU96948 False 1583 TUCP 0.47 8 12713199 12728025
TU96950 False 1558 TUCP 0.43 3 12713199 12716669
XM_026912186.2 True 1733 mRNA 0.45 8 12713065 12728037
XM_034304681.1 False 1636 mRNA 0.45 8 12713065 12728037

Neighbor

gene id symbol gene type direction distance location
LOC113525968 LOC108261035 coding downstream 51924 12657053 ~ 12661141 (-)
col4a1 col4a1 coding downstream 123515 12543779 ~ 12589550 (-)
pdzk1 pdzk1 coding downstream 622551 12085115 ~ 12090514 (-)
st6gal2a st6gal2 coding downstream 663364 12015445 ~ 12049701 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 717399 11966494 ~ 11995666 (-)
sema5ba sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding upstream 48189 12776226 ~ 12873123 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding upstream 213196 12941233 ~ 13011343 (-)
hacd2 hacd2,LOC107660639,LOC107741899 coding upstream 285488 13013525 ~ 13021552 (-)
LOC113526136 LOC108266238,LOC107741933,LOC106586425,LOC102795313,LOC101468032,LOC100710868 coding upstream 346659 13074696 ~ 13085298 (-)
inhbb inhbb,LOC103026097,LOC107596060,LOC107661134 coding upstream 585955 13313992 ~ 13321538 (-)
G81634 NA non-coding downstream 12572 12700250 ~ 12700493 (-)
G81612 col4a2,LOC108261033 non-coding downstream 57203 12654336 ~ 12655862 (-)
G81520 NA non-coding downstream 278493 12434367 ~ 12434572 (-)
G81413 NA non-coding downstream 416430 12296347 ~ 12296635 (-)
LOC113546902 NA non-coding downstream 502841 12208009 ~ 12210224 (-)
G81802 NA non-coding upstream 192879 12920916 ~ 12923093 (-)
G81932 nifk non-coding upstream 368672 13096709 ~ 13099204 (-)
LOC117597411 NA non-coding upstream 549863 13277900 ~ 13282536 (-)
G81995 NA non-coding upstream 571421 13299458 ~ 13300403 (-)
G82000 NA non-coding upstream 574017 13302054 ~ 13302257 (-)
irs2b irs2 other downstream 205377 12482661 ~ 12507688 (-)
mphosph8 mphosph8,LOC107658258 other downstream 1252740 11450212 ~ 11460325 (-)
LOC113546407 NA other downstream 1410221 11297868 ~ 11302844 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other downstream 1677504 11018279 ~ 11035561 (-)
G80600 NA other downstream 1741908 10969417 ~ 10971157 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other upstream 463677 13191714 ~ 13250548 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other upstream 1034380 13762417 ~ 13855186 (-)
med14 med14,LOC107756768 other upstream 1810831 14538868 ~ 14553495 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other upstream 2099638 14827675 ~ 14837409 (-)
dcaf6 dcaf6 other upstream 2321846 15049883 ~ 15077216 (-)

Expression


Co-expression Network