G82858


Basic Information

Item Value
gene id G82858
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14971678 ~ 14971897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU98260
TGAATAAAGTACAGCTGTTGCTATAGGGTTTTCCTGACATCATCTTGGTAACATCCAACTGGAAAAGCCATGGGCCACAAAGAGCTAACAATGCAGGTACAGGATCTCAATgttgaaaaatatcaatcaggagaAGGCATtggatataccatggaacactaaCACTAAGACACTAACACACTAAGACAATAATCAAtaagtggagaaaatatggcacaac

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98260 True 220 lncRNA 0.39 1 14971678 14971897

Neighbor

gene id symbol gene type direction distance location
dipk2b c6hxorf36 coding downstream 66943 14900159 ~ 14904735 (-)
fundc1 fundc1,LOC107673665 coding downstream 114158 14853744 ~ 14857520 (-)
efhc2 efhc2 coding downstream 120276 14842500 ~ 14851402 (-)
mao maob,mao,LOC108266753,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828 coding downstream 147131 14793906 ~ 14824547 (-)
caska cask,caska,LOC107565944 coding downstream 211964 14619022 ~ 14759714 (-)
slc35a5 slc35a5 coding upstream 41364 15013261 ~ 15021348 (-)
myo1b myo1b,LOC107664008 coding upstream 183690 15155587 ~ 15212864 (-)
stx19 stx19 coding upstream 446845 15418742 ~ 15424049 (-)
rsph1 rsph1 coding upstream 454957 15426854 ~ 15430622 (-)
fbxl3a fbxl3,fbxl3a,LOC107664003,LOC107670904,LOC107549764 coding upstream 464068 15435965 ~ 15441651 (-)
G82849 NA non-coding downstream 51398 14919749 ~ 14920280 (-)
G82759 NA non-coding downstream 179513 14727857 ~ 14792165 (-)
G82758 NA non-coding downstream 233894 14712582 ~ 14737784 (-)
G82757 NA non-coding downstream 241727 14674208 ~ 14729951 (-)
G82756 NA non-coding downstream 366663 14601745 ~ 14605015 (-)
G82861 NA non-coding upstream 19319 14991216 ~ 14991486 (-)
G82864 ccdc80,LOC101480086 non-coding upstream 30637 15002534 ~ 15004759 (-)
G82904 NA non-coding upstream 113466 15085363 ~ 15125648 (-)
G82943 NA non-coding upstream 237418 15209315 ~ 15212319 (-)
G82961 NA non-coding upstream 399365 15371262 ~ 15374502 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 134269 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 418183 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 1116492 13762417 ~ 13855186 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 1721130 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 2243641 12713065 ~ 12728037 (-)
dcaf6 dcaf6 other upstream 77986 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 135052 15106949 ~ 15114695 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 971843 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 1071386 16043283 ~ 16076620 (-)
G83554 NA other upstream 1248067 16219964 ~ 16220866 (-)

Expression


Co-expression Network