G82861


Basic Information

Item Value
gene id G82861
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14991216 ~ 14991486 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU98263
cccaggtgtgccctgttagattgattgtttaaacaattaatagctctgaatgtctacttttGGTTTGAAACCTGGGTATCACCTaggaagactgcatttgttgttaaaaaggataaaccaacatgaagaccagagagctgtctatgggagaaaagcaatccattttgaagctgagaaaagaaggaaaattcGATCAGAATCATTACACAAGCATTgtgcatagccaatacaacaattagGAATgctctgaaaaagaaagaaaccactggcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98263 True 271 lncRNA 0.38 1 14991216 14991486

Neighbor

gene id symbol gene type direction distance location
dipk2b c6hxorf36 coding downstream 86481 14900159 ~ 14904735 (-)
fundc1 fundc1,LOC107673665 coding downstream 133696 14853744 ~ 14857520 (-)
efhc2 efhc2 coding downstream 139814 14842500 ~ 14851402 (-)
mao maob,mao,LOC108266753,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828 coding downstream 166669 14793906 ~ 14824547 (-)
caska cask,caska,LOC107565944 coding downstream 231502 14619022 ~ 14759714 (-)
slc35a5 slc35a5 coding upstream 21775 15013261 ~ 15021348 (-)
myo1b myo1b,LOC107664008 coding upstream 164101 15155587 ~ 15212864 (-)
stx19 stx19 coding upstream 427256 15418742 ~ 15424049 (-)
rsph1 rsph1 coding upstream 435368 15426854 ~ 15430622 (-)
fbxl3a fbxl3,fbxl3a,LOC107664003,LOC107670904,LOC107549764 coding upstream 444479 15435965 ~ 15441651 (-)
G82858 NA non-coding downstream 19319 14971678 ~ 14971897 (-)
G82849 NA non-coding downstream 70936 14919749 ~ 14920280 (-)
G82759 NA non-coding downstream 199051 14727857 ~ 14792165 (-)
G82758 NA non-coding downstream 253432 14712582 ~ 14737784 (-)
G82757 NA non-coding downstream 261265 14674208 ~ 14729951 (-)
G82864 ccdc80,LOC101480086 non-coding upstream 11048 15002534 ~ 15004759 (-)
G82904 NA non-coding upstream 93877 15085363 ~ 15125648 (-)
G82943 NA non-coding upstream 217829 15209315 ~ 15212319 (-)
G82961 NA non-coding upstream 379776 15371262 ~ 15374502 (-)
G83171 NA non-coding upstream 495597 15487083 ~ 15487834 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 153807 14827675 ~ 14837409 (-)
med14 med14,LOC107756768 other downstream 437721 14538868 ~ 14553495 (-)
si:dkey-67c22.2 LOC108266737,LOC107597485,LOC108426078,LOC107756753,LOC107656780,LOC105016353,LOC106586502 other downstream 1136030 13762417 ~ 13855186 (-)
gli2a gli2,LOC107597558,LOC107661135,LOC107596061,LOC107714335,LOC106586430 other downstream 1740668 13191714 ~ 13250548 (-)
hspbap1 hspbap1,LOC108261044,LOC107596081 other downstream 2263179 12713065 ~ 12728037 (-)
dcaf6 dcaf6 other upstream 58397 15049883 ~ 15077216 (-)
LOC117597380 NA other upstream 115463 15106949 ~ 15114695 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other upstream 952254 15943740 ~ 15973914 (-)
lmo7a lmo7 other upstream 1051797 16043283 ~ 16076620 (-)
G83554 NA other upstream 1228478 16219964 ~ 16220866 (-)

Expression


Co-expression Network