G92220


Basic Information

Item Value
gene id G92220
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 604050 ~ 606076 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109484
tgaaagtaaactGCAGCAGAATAACAGACTCGCCGTTAATGCGGTGCTGCACAGGAACAGGAAGAAAGCTTCAAAGCGTGGTTGATCTCGCGCACTTTTCCCTGACATTGATGGTAATCACAAGAATCTCTTCTACAGCAGCACCACAGGCAACAATTATCTTTAACACAACTCGTATTTTTGTCGAAATCATTTTTGGACATGATGTAGCCTGCAAAAGATAACCAAAGGAAATAAACGGAGgtattaaaacatataatcacAATTACAGCAATAAGGTGCCTCTCTGGTagaaatacactgtatggccaaaagtatgtggacacctgaccatcacaccccacaaagttggaagcacacaatagtATAGAATGTACAGTCCTTCTTCTGTTGTCTCCCTGATTTCCTCTATTAATCATACTCATGTTTTTCATGGTTTCTTGATTAGTTGCTCT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process

KEGG:

id description
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU109484 True 455 lncRNA 0.40 4 604050 606076

Neighbor

gene id symbol gene type direction distance location
LOC113534440 LOC108264511 coding downstream 356740 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 380666 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 426406 177113 ~ 177644 (-)
LOC117597506 NA coding downstream 448906 154067 ~ 155144 (-)
LOC113534665 NA coding downstream 462535 140270 ~ 141515 (-)
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding upstream 89093 695169 ~ 699777 (-)
LOC117597537 fsd2 coding upstream 428873 1034949 ~ 1056267 (-)
homer2 homer2,LOC108414443 coding upstream 450629 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 476620 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 497875 1103951 ~ 1116054 (-)
LOC117597554 NA non-coding downstream 113254 489562 ~ 490796 (-)
G92197 NA non-coding downstream 208786 393032 ~ 395264 (-)
G91873 NA non-coding downstream 304953 298547 ~ 299097 (-)
G91786 LOC108237865,LOC106563385,LOC106560410,LOC106599233,LOC106566551,LOC106561221,LOC106564134,LOC106572279 non-coding downstream 420254 183534 ~ 183796 (-)
G91764 NA non-coding downstream 518505 84295 ~ 85545 (-)
G92247 NA non-coding upstream 108744 714820 ~ 715497 (-)
G92236 NA non-coding upstream 125039 731115 ~ 732765 (-)
G92239 NA non-coding upstream 139451 745527 ~ 773557 (-)
G92284 NA non-coding upstream 225306 831382 ~ 891286 (-)
G92285 NA non-coding upstream 259798 865874 ~ 887002 (-)
dmxl2 dmxl2 other downstream 280110 266207 ~ 323940 (-)
LOC113534658 NA other downstream 459089 143425 ~ 144961 (-)
G92240 NA other upstream 100674 706750 ~ 747530 (-)
usp8 LOC107665382,LOC107595392 other upstream 176834 782910 ~ 802212 (-)
slc27a2a LOC108264486 other upstream 229040 835116 ~ 846935 (-)
G92340 NA other upstream 375991 982067 ~ 989056 (-)
bloc1s6 bloc1s6 other upstream 591059 1197135 ~ 1292493 (-)

Expression


Co-expression Network