G92236


Basic Information

Item Value
gene id G92236
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 731115 ~ 732765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109520
TGGGTTTGAGAGACGagatttaaattcatttaaaaaaatgttaaatgtcattctttaattaaaaaaaaaaccctgtaattgtaataattgtaattataaataaaagaggaatgaaacacgtttgggacgtgctgttgcaggaaaataatcaacttcatggtgatAACAGTGACGCGgctccatcacaccatcctgctgttgattattttcctgtaacagcatgacgcagagtgttttactccttatttAACACCTGGTTCAAAACACACAGCGTAATTATTACAGCAACTTCAGTGTCAGtcagcagttttatttttataacatgttcaaaagtttacatccctcCTGTTACCTGATTTGAATTTGTGCTTCGTTAAGGTGTTTAATCACATAAACCACTCGTTACACTCTTGAGCAGTCGAGTTAGAAAATaagaaatcagaaaataaaacagctcaGAAAGTATAAGATTTCTGACAATTCTGTGCTTTTATGATATTTATCCATGAAGAGCCTCATTACAGTGTGAATCGAACATCACCGCAAACTTATTACTGGCATCAAACGTTTGTTCGTCTTTAATTTAAGGCATGAAAAGAACCGATTAATGAAGATCTgattaaatacagaaacactgatatcattatttaaaaacaaacacacacaggccccGTTTTACGCCCCGCTTCAACACGTGACTGTGGTTAGACGTGGACGTCACACCTGTGCTAGCGTCTCACAGTGCTGAGCGCTAACCTGTGGGACAGGTAGAGCAGGAAGTCAGGTTATTGACCTGCTCATGATGTCACGCGTACAGAACGCTGCGCTAAAACACAGCCGTGTGTACGTTCACCACgtgttctgtttaatttacCCACACATCTTGAAGGAAAGGTTGATGTTCAGGATGTTTCTGACTCGTTTCCATGGTCACCGTGTCTTTACGCTGTCTGTAAAACACTTTGATCACGTGTCAGTGTGCGTTGTGGGCGGAGCCTGAGGCACTGAATaaggccttttttttaatagatattaatgttgtttattaaagaGAGAGCGTAAGACTGAATTGGTCCTGATACAGCCGATCACAGGGCTTAAAGtgctcaacacacactcacacacacactcacacacacactcacacacacactcacacacacactcacacacacacacacacacacacactcacactcacactcacacacacacacgtttaaatCCAGCCGATCAGCACTTCCTCACTGTGCTGGGATATTCAGCATCtccatctgagagagagagagagagagagagagagaaagtgaaagataaagagagaaagacagacggagagaaagtgaaaggaagagtgagaaagagagagagagagaaacagagagacagagagaaagggagagagagaaacagacagagaaacagagagagaaaaagagtgagagaaagtgagagataaagagagaaagacagagggagaaagagagaaacagagagagaacagagagtgagacacagaaagagagagagcgagagagagagagagagagagagagagagagagagagagagagacagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109520 True 1581 lncRNA 0.41 2 731115 732765

Neighbor

gene id symbol gene type direction distance location
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 31338 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 70561 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 483805 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 507731 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 553471 177113 ~ 177644 (-)
LOC117597537 fsd2 coding upstream 302184 1034949 ~ 1056267 (-)
homer2 homer2,LOC108414443 coding upstream 323940 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 349931 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 371186 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 392866 1125631 ~ 1149797 (-)
G92247 NA non-coding downstream 15618 714820 ~ 715497 (-)
G92220 NA non-coding downstream 125039 604050 ~ 606076 (-)
LOC117597554 NA non-coding downstream 240319 489562 ~ 490796 (-)
G92197 NA non-coding downstream 335851 393032 ~ 395264 (-)
G91873 NA non-coding downstream 432018 298547 ~ 299097 (-)
G92239 NA non-coding upstream 12762 745527 ~ 773557 (-)
G92284 NA non-coding upstream 98617 831382 ~ 891286 (-)
G92285 NA non-coding upstream 133109 865874 ~ 887002 (-)
G92309 NA non-coding upstream 154242 887007 ~ 924119 (-)
G92312 NA non-coding upstream 163375 896140 ~ 906742 (-)
dmxl2 dmxl2 other downstream 407175 266207 ~ 323940 (-)
LOC113534658 NA other downstream 586154 143425 ~ 144961 (-)
usp8 LOC107665382,LOC107595392 other upstream 50145 782910 ~ 802212 (-)
slc27a2a LOC108264486 other upstream 102351 835116 ~ 846935 (-)
G92340 NA other upstream 249302 982067 ~ 989056 (-)
bloc1s6 bloc1s6 other upstream 464370 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 489956 1222721 ~ 1226351 (-)

Expression


Co-expression Network