G92240


Basic Information

Item Value
gene id G92240
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 706750 ~ 747530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109526
gtgtgtgtatgagagtgtgtgtgtatgagagtgtgtgtatgagagtgtgtgtgtatgagtgtgtgtgtatgagagtgtgtgtgtatgagagtgcgtgagtgtgtgtgtgtctctcaccgCTGCGAGGCCCATCCCCATATCTCCTGATCCCACGTGTGTCATGTGTACAAAGTTGGTCGGCTCTCCGATCATCGAGCGATCGATTCGCCGTCtcctcttctacacacacacacacacacacacacacacgcTGGTTGAGGCTGTTCAGCGATACAGCAGCTAAAGCACACCCAGAACTCTGTcatctctcctcacacacacacacacacacacacacacacacacacacaacacacacttcctcccacacacagtctctctctccctctctctctgtgtctttctatgtctctcgctctctctgcacTTCCTGTTCAGTCTTCAGCTCTGCCACAAGTTTGTGCCGGAAGTTGGTGACGGGCGTTCCtcCTCGGACACTTCCTCGAAGTtgctgtcagaaaaaaaaaaatctgccttcAGATTTTCTCGCTGTTCTGCTCAATTCTGCAGATCTATACGTCATACATTCAGGAAACGAAGGCGATAC
>TU109527
GATCCCTCAGACACCCTGTGTCGCTCCCTCCGTCACTCCCTCAGACACCCTGCGTCGATCCCTCCGTCACTCCCTTAGACATCCTCCGTCACTCCCTTAGACACCCTCCGTCGCTCCCTCAGACACCCTGCATCGCTCCCTCCGTCACTCCCTCAGACACCCTGCGTCACTCCCTCCGTCACTCCCTTAGACACCCTGCATCGTTCCCTCAGACACCCTGCGTCGCTCCCTCTGTCACTCCCTTAGACACCCTGCGTCGCTCCCTCTGTCACTCCCTTAGACACCCTGCGTCGCTCCCTCTGTCACTCCCTTAGACACCCTGCGTCGCTCCCTCCGACAGCCTCCATCACACCCTCCGTCACTCCCTCAGACACCCTGCGTCACTCCCTCCGTCACTCCCTTAGACACCCTGCATCGTTCCCTTAGACACCCTCCATCACACCCTCCGTCGCTCCCTCAGACACCCTCCATCACACCCTCCGTCGCTCCCTCAGACACCCTCCGTCGATCCCTCCGTCACTCCCTCAGACACCCTCCGTCGCTCCCTTAGACACTTCTTTGACACCCTTGGCCACTTTCGGGACACCACTAAACACTTCCTATTCTACATAACTTTCTCATTAGATGGTCCCTAGACACCCTTGTTCACTCTTGAGGGCACTCCCTAGATACCCTTAGTGTCTATCGATACTCCTCTCTATACGGCTCCCTACACACTCTTGGTCACCATctagatgtttttaaatgaaaacagaagTTCAGtctctattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactcaccgGATCACTGCGCGCTCTCCGGTGTGCCATTCCCATAACCGCCTTTAGATTTCATCTGTGCCTGCACCGAGTTCaccttcgCTGCGAGGCCCATCCCCATATCTCCTGATCCCACGTGTGTCATGTGTACAAAGTTGGTCGGCTCTCCGATCATCGAGCGATCGATTCGCCGTCtcctcttctacacacacacacacacacacacacacacgcataaacacgcacacactcctGTTCAGTTCTGTCCTCTTCATTGGGAGACGCACATCagatgtgttcagtgttcagtgtgtgtgttttttttgactCACTGGTTGAGGCTGTTCAGCGATACAGCAGCTAAAGCACACCCAGAACTCTGTcatctctcctcacacacacacacacacacacacacacacacacacacaacacacacttcctcccacacacagtctctctctccctctctctctgtgtctttctatgtctctcgctctctctgcacTTCCTGTTCAGTCTTCAGCTCTGCCACAAGTTTGTGCCGGAAGTTGGTGACGGGCGTTCCtcCTCGGACACTTCCTCGAAGTtgctgtcagaaaaaaaaaaatctgccttcAGATTTTCTCGCTGTTCTGCTCAATTCTGCAGATCTATACGTCATACATTCAGGAAACGAAGGCGATAC
>TU109528
gtgtatgtgtattgcgtgagtgtgtgtatatgagtgtgtgtgtatgagtatgtgtgtatgagagtgtgtgtgtatgagtgtgtgtgtatgagagtgtgtgtgtatgagtgtatgtgtattagtatgtgtgtatgagagtgtgtgtgtatgagtgtgtgtgtatgagtgtgtgtgtattagtatgtgtgtatgagtgtgtgtgtatgagagtgtgtgagtgtgtgtatgagagtgtgtgtgtatgagtgtgtgtgtatgagagtgtgtgtatgagagtgtgtgtgtatgagtgtgtgtgtatgagagtgtgtgtgtatgagagtgcgtgagtgtgtgtgtgtctctcaccgCTGCGAGGCCCATCCCCATATCTCCTGATCCCACGTGTGTCATGTGTACAAAGTTGGTCGGCTCTCCGATCATCGAGCGATCGATTCGCCGTCtcctcttctacacacacacacacacacacacacacacgcataaacacgcacacactcctGTTCAGTTCTGTCCTCTTCATTGGGAGACGCACATCagatgtgttcagtgttcagtgtgtgtgttttttttgactCACTGGTTGAGGCTGTTCAGCGATACAGCAGCTAAAGCACACCCAGAACTCTGTcatctctcctcacacacacacacacacacacacacacacacacacacaacacacacttcctcccacacacagtctctctctccctctctctctgtgtctttctatgtctctcgctctctctgcacTTCCTGTTCAGTCTTCAGCTCTGCCACAAGTTTGTGCCGGAAGTTGGTGACGGGCGTTCCtcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109526 False 607 lncRNA 0.50 3 706750 708348
TU109527 True 1474 TUCP 0.54 4 706750 710654
TU109528 False 820 TUCP 0.48 3 707760 747530

Neighbor

gene id symbol gene type direction distance location
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 6973 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 46196 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 459440 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 483366 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 529106 177113 ~ 177644 (-)
LOC117597537 fsd2 coding upstream 287419 1034949 ~ 1056267 (-)
homer2 homer2,LOC108414443 coding upstream 309175 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 335166 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 356421 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 378101 1125631 ~ 1149797 (-)
G92220 NA non-coding downstream 100674 604050 ~ 606076 (-)
LOC117597554 NA non-coding downstream 215954 489562 ~ 490796 (-)
G92197 NA non-coding downstream 311486 393032 ~ 395264 (-)
G91873 NA non-coding downstream 407653 298547 ~ 299097 (-)
G91786 LOC108237865,LOC106563385,LOC106560410,LOC106599233,LOC106566551,LOC106561221,LOC106564134,LOC106572279 non-coding downstream 522954 183534 ~ 183796 (-)
G92284 NA non-coding upstream 83852 831382 ~ 891286 (-)
G92285 NA non-coding upstream 118344 865874 ~ 887002 (-)
G92309 NA non-coding upstream 139477 887007 ~ 924119 (-)
G92312 NA non-coding upstream 148610 896140 ~ 906742 (-)
G92321 NA non-coding upstream 163780 911310 ~ 914928 (-)
dmxl2 dmxl2 other downstream 382810 266207 ~ 323940 (-)
LOC113534658 NA other downstream 561789 143425 ~ 144961 (-)
usp8 LOC107665382,LOC107595392 other upstream 35380 782910 ~ 802212 (-)
slc27a2a LOC108264486 other upstream 87586 835116 ~ 846935 (-)
G92340 NA other upstream 234537 982067 ~ 989056 (-)
bloc1s6 bloc1s6 other upstream 449605 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 475191 1222721 ~ 1226351 (-)

Expression


Co-expression Network