bloc1s6 (bloc1s6)


Basic Information

Item Value
gene id bloc1s6
gene name bloc1s6
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1197135 ~ 1292493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109581
agaagtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaacatgAATCTGAATTTCCGAACTCTGACtgggaaaaaccaaagaagATGGAATTCCTGCTCAGAAACTCGTCCTCAACCCCGCGTTCAGAACATGAATTTATGAACATGAATGAGTTTATAGCACACATCAGTCGGGTAACTCAGTGACACTTACGTCACATCATTTCCCAGTTCAGTTAAACGCAGCGTTTAAACAGTTCCGCGTGTTTATTTCTGCACGCGTGATCAAAGTAAGACAGAGTGCTTAGTGCAGGTTGAGGGGTTTGGGACGGAGCCTGAGTGTGGAACGCAGGTAGGAGCAGAACTCTGTTTGGCCACTAGGTGGAGTCAGAGGTGTAACATTAGCATGGGtcagtttcacacacatactttcCACTTATTCCATTAATTTATACACACAGTCACCAGTTTCTTTATCATTTatagataattatatatatatatattgtaattgtCGTGTGCTTTTGAGAGCATGTTGTCCTTGTGTAAACATTTATTGTACATTAAAATACTCTG
>XM_034305211.1
ATAGACTTACAAATCATTCCCCAATCTTACTTCCGCATTCGTTTATTTGGAAATCAGCGCAAAGCGGATCAACACTTCCGGTTTGGAAATATCACGTGACATTTTCCGTGGCTGATATGCAGAAAGTGAGAAAAGCTGAAAAGGAGGAGATTTGAGGTAAAATGGAGTCAGAAGGAGATGTGGATCTGTCCTCCAGTGAGTCCTCACCTGAGaaaggagcagatgtgtgtgctgtgagcgAGCCTCAGCATCTGGAGGATTTGGTGTTAGTGAATGGGGAGTGTGTAGAGAAACTGAGCGAGGGTCTGATCTCACACTACCTCCCAGATCTACAGCGCTCCCGAGATACACTGCAGGAACTcacACAAAATCAAGACGTACTGCTGGACACCCTGGAGCAGGAAATAACCAAGTTCAGAGAGTGTAACTCCATGATCGATCTCAACGCACTGttcACAGAGGCTAAAGTGTATCACAGTAAGCTGGTGAATATACGCAGAGAGATGATCAGCCTGCATGACAGAACGTCCAAACTGAAGaagcgAGCTCTGAAGCTGCAGCAGCAGAAACAGAAGGAGGCGCTGGAGCgagagcagcagagagagagagagctggagagagagagacagctcaTCGCCAAACCGGCCAAAcgcacctgaacacacacacacacacacacacacacacgacatgtCAGTGTTTAACGGAAGTGTTAGAAGTGTTCTTATTAGGGTTCATCCTAACAAAAGAGATAATATCACTCCATCattctcctctctttcctcttgAACCGTGTTCCTTTTTCTCACACAGGCTCTAGAACggtacagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaacatgAATCTGAATTTCCGAACTCTGACtgggaaaaaccaaagaagATGGAATTCCTGCTCAGAAACTCGTCCTCAACCCCGCGTTCAGAACATGAATTTATGAACATGAATGAGTTTATAGCACACATCAGTCGGGTAACTCAGTGACACTTACGTCACATCATTTCCCAGTTCAGTTAAACGCAGCGTTTAAACAGTTCCGCGTGTTTATTTCTGCACGCGTGATCAAAGTAAGACAGAGTGCTTAGTGCAGGTTGAGGGGTTTGGGACGGAGCCTGAGTGTGGAACGCAGGTAGGAGCAGAACTCTGTTTGGCCACTAGGTGGAGTCAGAGGTGTAACATTAGCATGGGtcagtttcacacacatactttcCACTTATTCCATTAATTTATACACACAGTCACCAGTTTCTTTATCATTTatagataattatatatatatatattgtaattgtCGTGTGCTTTTGAGAGCATGTTGTCCTTGTGTAAACATTTATTGTACATTAAAATACTCTGTTAATAAACACTTTTGCTTCTAAA
>XM_034305212.1
TTATAGACTTACAAATCATTCCCCAATCTTACTTCCGCATTCGTTTATTTGGAAATCAGCGCAAAGCGGATCAACACTTCCGGTTTGGAAATATCACGTGACATTTTCCGTGGCTGATATGCAGAAAGTGAGAAAAGCTGAAAAGGAGGAGATTTGAGGTAAAATGGAGTCAGAAGGAGATGTGGATCTGTCCTCCAgagcagatgtgtgtgctgtgagcgAGCCTCAGCATCTGGAGGATTTGGTGTTAGTGAATGGGGAGTGTGTAGAGAAACTGAGCGAGGGTCTGATCTCACACTACCTCCCAGATCTACAGCGCTCCCGAGATACACTGCAGGAACTcacACAAAATCAAGACGTACTGCTGGACACCCTGGAGCAGGAAATAACCAAGTTCAGAGAGTGTAACTCCATGATCGATCTCAACGCACTGttcACAGAGGCTAAAGTGTATCACAGTAAGCTGGTGAATATACGCAGAGAGATGATCAGCCTGCATGACAGAACGTCCAAACTGAAGaagcgAGCTCTGAAGCTGCAGCAGCAGAAACAGAAGGAGGCGCTGGAGCgagagcagcagagagagagagagctggagagagagagacagctcaTCGCCAAACCGGCCAAAcgcacctgaacacacacacacacacacacacacacacgacatgtCAGTGTTTAACGGAAGTGTTAGAAGTGTTCTTATTAGGGTTCATCCTAACAAAAGAGATAATATCACTCCATCattctcctctctttcctcttgAACCGTGTTCCTTTTTCTCACACAGGCTCTAGAACggtacagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaacatgAATCTGAATTTCCGAACTCTGACtgggaaaaaccaaagaagATGGAATTCCTGCTCAGAAACTCGTCCTCAACCCCGCGTTCAGAACATGAATTTATGAACATGAATGAGTTTATAGCACACATCAGTCGGGTAACTCAGTGACACTTACGTCACATCATTTCCCAGTTCAGTTAAACGCAGCGTTTAAACAGTTCCGCGTGTTTATTTCTGCACGCGTGATCAAAGTAAGACAGAGTGCTTAGTGCAGGTTGAGGGGTTTGGGACGGAGCCTGAGTGTGGAACGCAGGTAGGAGCAGAACTCTGTTTGGCCACTAGGTGGAGTCAGAGGTGTAACATTAGCATGGGtcagtttcacacacatactttcCACTTATTCCATTAATTTATACACACAGTCACCAGTTTCTTTATCATTTatagataattatatatatatatattgtaattgtCGTGTGCTTTTGAGAGCATGTTGTCCTTGTGTAAACATTTATTGTACATTAAAATACTCTGTTAATAAACACTTTTGCTTCTAAA

Function

symbol description
bloc1s6 Predicted to be involved in intracellular transport. Predicted to be located in cytoplasm. Predicted to be part of BLOC-1 complex. Predicted to be active in transport vesicle. Predicted to be extrinsic component of membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 9. Orthologous to human BLOC1S6 (biogenesis of lysosomal organelles complex 1 subunit 6).

NR:

description
PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6

GO: NA

KEGG:

id description
K20188 BLOC1S6; biogenesis of lysosome-related organelles complex 1 subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU109581 False 572 lncRNA 0.41 2 1197159 1292493
XM_034305211.1 True 1406 mRNA 0.44 6 1197135 1201723
XM_034305212.1 False 1387 mRNA 0.44 6 1197135 1201725

Neighbor

gene id symbol gene type direction distance location
bnc1 bnc1,LOC106591559 coding downstream 47338 1125631 ~ 1149797 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding downstream 81081 1103951 ~ 1116054 (-)
LOC113526880 NA coding downstream 111822 1082696 ~ 1085313 (-)
homer2 homer2,LOC108414443 coding downstream 122232 1056705 ~ 1074903 (-)
LOC117597537 fsd2 coding downstream 140868 1034949 ~ 1056267 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding upstream 1559 1294052 ~ 1314655 (-)
dut dut,LOC102779749 coding upstream 170250 1462743 ~ 1469671 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding upstream 186435 1478928 ~ 1492027 (-)
slc24a5 slc24a5,LOC108412301 coding upstream 274078 1566571 ~ 1586370 (-)
bcl2l10 NA coding upstream 572090 1864583 ~ 1876045 (-)
G92359 NA non-coding downstream 180953 1014447 ~ 1016182 (-)
G92343 NA non-coding downstream 212614 982501 ~ 984521 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 220586 931958 ~ 976549 (-)
G92338 NA non-coding downstream 233925 962489 ~ 963210 (-)
G92309 NA non-coding downstream 273016 887007 ~ 924119 (-)
G92421 NA non-coding upstream 44398 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 52057 1344550 ~ 1344828 (-)
G92413 secisbp2l non-coding upstream 58713 1351206 ~ 1354977 (-)
G92459 NA non-coding upstream 119200 1411693 ~ 1413647 (-)
G92463 NA non-coding upstream 123589 1416082 ~ 1416504 (-)
G92340 NA other downstream 208079 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 350200 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 394923 782910 ~ 802212 (-)
G92240 NA other downstream 449605 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 873195 266207 ~ 323940 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 223245 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 319318 1611811 ~ 1648286 (-)
G92531 NA other upstream 475912 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 702538 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 743448 2035941 ~ 2130790 (-)

Expression


Co-expression Network