G92282 (LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478)


Basic Information

Item Value
gene id G92282
gene name LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 931958 ~ 976549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109602
TGATACTAGCGTGTGATGTAAGCACACACCTGATGTACAGGTACAGGGGTTCGAATGACTCTCTTCGCGAGGCCTGTTCGATGTAGCCCGAGCCCTTCCCGCGCAGGAAGACGCGCGCCCCGGTCTCCGTCTGGATGTGCTGCAGGTACGAGCCGCTCGGTCCCTCCACCTTCTCGTTCACGCTGAAGCCCGGCAGGCATTGCTCCAATCCTACAAATAGCTTAGTGTGCACAAAACTCTGCAACCAGCACCAGAGGTACAGTgattacacactacacccttAACCTACTAGagctctatacacacacacacacacacacacacacacacacacactgcactagcCCCACCCACTCCCAAAGCAAATAATCTAAATCAATTTTAGACATACTTCAATATTTCCAAGCTAGGTTTAACTCTGACGTAGATATTCAAGATTATTAAAAGTTATTTCCTCAGTCTCTTTACTCCTAGCTAGTTTTGCTAGCTAACAATTCCACTCACTCATAACTCCTTAAAGTTTCACAAGAAGTGAAAAAGGAAATTCAATCGTCGTTTTCAAGTTCAGATTTATTTCAAAAGCATGTTAAGAAGCATGTTAGCCTGACAACAGTACCACTCGggtaaaaggggaaaaagaaaacacagttcaCGGATGAAGATATCTCCGTGGAACTATTTAACCACATCTGCGTCTGATTGGGGGTTTAGTGGGAGAGTAACGATCGAGGGTTCGGAGTCAGCTACTGATCGAAAAGGTTTAAAGTTCACCTCGGTGTTCATAGTTGTCTCAGCCACAGCAAACAAACTAATGTTGCTATAGTCTTCAAAACAGCAGCACCCGGGCATGTTCTCCTGTCGTGATCAAtctgaacatgtgtgtgtatatgagtgtgtatgagtgtgtgtgtgtgtgtgtcaccttgTACTCAGAGGCCTTGATGGGGCAGTTCTGGGTGTTGTTGCCCTGCGGGGGGGAGTGTGGGGGGCAGTCCTCGGACTCTTTTCCACTGTGATACACCACCCGATCCGAGATATGGATGCTGGAAGCACAGCCCATGCTTCACTCCcgcttcttcttcctcttcttctcttcttcttctcgtcTCGTTATGTCCTCCAAGCCAGGACGCCTAGCTaggtctttctttttcactcagGTTCTCCAATCCTCCTTTCTTTGTCCAGACCAAACCGTATGTCCTTTTCTTAGGTCCTCATAGAAAGCCTCTATGATTTATAGCaagttctccaaaaaaaaaaaaagaccaggcacGTTATGTTCTCTAGTTTAAATCCTCCACGCAAGGCCTCTTAGATTCCCCAGTCGACTTCTTGATCTTCTCAATTCCTCCAATCCAAGCTGAGATACGTTCTCCTTTTGATTATCTTCTTCTTCCCTTTGACTTGAGTCCTTCAGATCAGGCCTGTTACGTTCTCCGCTTGTTCCTCTACTTCTTTTTTCCTTAAGTCCACTAAGAAGGCCCTTTTAGATACTCAGCATCTACAAAGTCCTACAAACAAGGCCAGGCACATTATGTTCTCTAGTTCTTCTCGTTGAGTTCTTCTCCTCCAACCCAGGCCTGGTCACGttctccacttttttttttttttttttttttttttaaacgtccACCTAGAAGACCCTTTAGATACTCCACATAAGTTCTCCAAACCAGGCCAGGAACATTACGTTCTCCACTTGattatcttcttcttctccttctctttttgtcCTTTATTTCCCTGTTtgaatgcattaataataataataataacgataataataataataataataaaaaatgatgatactaataataataataataataataacaataataataataataataatagtctatCTTCCTTTTCCCCCACCCCTGACCAGGAAACAGATTTCCTCTCGCGCTCAAACTCCATGGAgctccattttagatcaaaccCACTTCATTccacatcaccatcatcatcaccatcatcatcatcatcttcttcatcttcatcaccatcatcattatgatcatcatcatcatcatcatcatcatcaccactccGTCATTATGTCACTGTAACCTCTtttcaaaagaagaaaagaaaagaacagaagagaaagaaagaaagaaagaaatgtagtCTTGTAGTTAGTTCCAGGCCGGAGTTTGATCCATGTTTggccttgttttatttttttatgttttttttttttttttactccaccCTGAAATCTGGAGAGAGAAAATCAGCTTTTGGTGACGGAGGAGATCTTGTGCGCTTCACAGCGTTTCAACAGGCGAAAATATTCCCTCAGCATTACTGCGGCGGATTAATCCTGCGCCTTTCTGCACCCAAAAGGGACATTTTACACCCAAAAAAAGCGCAGTTTCCGAGGCGGTGTGCTCACGCGCTCGCATCCGAGATGGACACGAAGAAAAATCCGCGGtttcagagaagaaaaaaagaaagaaaagcgcTCAGCACAGAATCACACGGCCTCCGATTTCTCCTCTTTTAgaagcaaaaaaaggaaaagagatgtAGGCTAGAGGCTGTCAGATTGTCTGCGGGTAACCCGCTCAGGATCCGCgcgcaaaaaaaaacaaaaactgcgCCCTCGACTTCTCCGCTTCGACCCTGAGCGCGTCGGCGGAGCGGATCGGAGCCTGAAAGCGGCAGAAAAGCAGCGGAATAAATGGTGTTTTTCTGCTCCTCGTCTTTTCCAGTCCTTCAGCGCTGCTTGACAGCAGCAGATCCAATAAAAGCACGCGCGAGGATTGACCTACAGCCTCTACTGACGTCAATGCAAATGAGCCGCGCGCGGCCAATCACAGGCCAGCGCTGCCGGCCGGGGAGAAGCGCGCGCGCGGCGGCAGCTTTGAAACGCACACTTCGCTTTGATGTCATATTTATACAGgaaattattttagttttattctgtttaccaaatatatatatatatttttgcacttttatatctttag
>TU109603
TGATACTAGCGTGTGATGTAAGCACACACCTGATGTACAGGTACAGGGGTTCGAATGACTCTCTTCGCGAGGCCTGTTCGATGTAGCCCGAGCCCTTCCCGCGCAGGAAGACGCGCGCCCCGGTCTCCGTCTGGATGTGCTGCAGGTACGAGCCGCTCGGTCCCTCCACCTTCTCGTTCACGCTGAAGCCCGGCAGGCATTGCTCCAATCCTACAAATAGCTTAGTGTGCACAAAACTCTGCAACCAGCACCAGAGGTACAGTgattacacactacacccttAACCTACTAGagctctatacacacacacacacacacacacacacacacacacactgcactagcCCCACCCACTCCCAAAGCAAATAATCTAAATCAATTTTAGACATACTTCAATATTTCCAAGCTAGGTTTAACTCTGACGTAGATATTCAAGATTATTAAAAGTTATTTCCTCAGTCTCTTTACTCCTAGCTAGTTTTGCTAGCTAACAATTCCACTCACTCATAACTCCTTAAAGTTTCACAAGAAGTGAAAAAGGAAATTCAATCGTCGTTTTCAAGTTCAGATTTATTTCAAAAGCATGTTAAGAAGCATGTTAGCCTGACAACAGTACCACTCGggtaaaaggggaaaaagaaaacacagttcaCGGATGAAGATATCTCCGTGGAACTATTTAACCACATCTGCGTCTGATTGGGGGTTTAGTGGGAGAGTAACGATCGAGGGTTCGGAGTCAGCTACTGATCGAAAAGGTTTAAAGTTCACCTCGGTGTTCATAGTTGTCTCAGCCACAGCAAACAAACTAATGTTGCTATAGTCTTCAAAACAGCAGCACCCGGGCATGTTCTCCTGTCGTGATCAAtctgaacatgtgtgtgtatatgagtgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgt
>TU109605
tggaATGATTGTGATATGATGTAAATCCTTATAGGTAGAAATAGAAATGAgtgaataaaagacaaaaacaggtTTCAAGGTTGTGATTTTATTCCATAGGAACAGTTATTTTCCAAACTCAGAAAAGTTCAGCTCAAGGAAGGACTCGAGGGGGTCAGGGGCACATCTTCTCCTGCTAGAGGGTTGGGGTAGGTCGGGGAATAATGTGGTGTGAATGTGGCTGGGgagaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtaagcaggaGCAGTGCAGGCCATGATCTCTGCAGATCGGCCAGTTTCTCCCTGCTGATGTTGATTTAGGAGGTGAGTATCAGCAAGAGCCAAATGATCTTCACTGGCCTCGCCTTCATtaacctccacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtgcatGCAGTGTTCCAACACCGCTCTCAACACACCCTCGTCTGCTTCCCCTAACGCACAGCGGAGTGGCCCGGTCTCGCTGCGCAGGTCAAGTAGCTGATTTACGCGCGGTTTTCTTCAGATCAGCTAATCACCTGGCTTGGAAGTCATTCTCGTAGGTGATCCACCTGCATGTGCTTCTATTTTAGCTGGCTAATGCGCTAAGCTAAACAGCTAGCCAGTTTGCTAATTCACAGCGTAGCGAAGGTGCCTCAGCCAAGCGGAAGTGCACGAGGGCGTGTTAGAGACGGGACTGGAACACAACCCCCGCTTAGCCCTAGGGTTAATAATGCGGTACCTACCCCAGCGTGAGGAGGAGGGGGTCTGTGTGCGGGCGTTACGGGAGCGTTCGGGGGGCGTGGCGTAGGGAGGTGTGGCTGTGGGGGTACGGACGGTCGTGGGGGTTGGGGTAAACAGGAACCGGGGGCATGACGGCCGGCTGCTGGCCCCCTGACGCTCGCATCACGTCCTCGGAGATTATTTCTTTGATCCGCA
>TU109608
TGATACTAGCGTGTGATGTAAGCACACACCTGATGTACAGGTACAGGGGTTCGAATGACTCTCTTCGCGAGGCCTGTTCGATGTAGCCCGAGCCCTTCCCGCGCAGGAAGACGCGCGCCCCGGTCTCCGTCTGGATGTGCTGCAGGTACGAGCCGCTCGGTCCCTCCACCTTCTCGTTCACGCTGAAGCCCGGCAGGCATTGCTCCAATCCTACAAATAGCTTAGTGTGCACAAAACTCTGCAACCAGCACCAGAGGTACAGTgattacacactacacccttAACCTACTAGagctctatacacacacacacacacacacacacacacacacacactgcactagcCCCACCCACTCCCAAAGCAAATAATCTAAATCAATTTTAGACATACTTCAATATTTCCAAGCTAGGTTTAACTCTGACGTAGATATTCAAGATTATTAAAAGTTATTTCCTCAGTCTCTTTACTCCTAGCTAGTTTTGCTAGCTAACAATTCCACTCACTCATAACTCCTTAAAGTTTCACAAGAAGTGAAAAAGGAAATTCAATCGTCGTTTTCAAGTTCAGATTTATTTCAAAAGCATGTTAAGAAGCATGTTAGCCTGACAACAGTACCACTCGggtaaaaggggaaaaagaaaacacagttcaCGGATGAAGATATCTCCGTGGAACTATTTAACCACATCTGCGTCTGATTGGGGGTTTAGTGGGAGAGTAACGATCGAGGGTTCGGAGTCAGCTACTGATCGAAAAGGTTTAAAGTTCACCTCGGTGTTCATAGTTGTCTCAGCCACAGCAAACAAACTAATGTTGCTATAGTCTTCAAAACAGCAGCACCCGGGCATGTTCTCCTGTCGTGATCAAtctgaacatgtgtgtgtatatgagtgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacgtgatGTTGAATCTTTTCAAAACAGATTC
>TU109610
TGATACTAGCGTGTGATGTAAGCACACACCTGATGTACAGGTACAGGGGTTCGAATGACTCTCTTCGCGAGGCCTGTTCGATGTAGCCCGAGCCCTTCCCGCGCAGGAAGACGCGCGCCCCGGTCTCCGTCTGGATGTGCTGCAGGTACGAGCCGCTCGGTCCCTCCACCTTCTCGTTCACGCTGAAGCCCGGCAGGCATTGCTCCAATCCTACAAATAGCTTAGTGTGCACAAAACTCTGCAACCAGCACCAGAGGTACAGTgattacacactacacccttAACCTACTAGagctctatacacacacacacacacacacacacacacacacacactgcactagcCCCACCCACTCCCAAAGCAAATAATCTAAATCAATTTTAGACATACTTCAATATTTCCAAGCTAGGTTTAACTCTGACGTAGATATTCAAGATTATTAAAAGTTATTTCCTCAGTCTCTTTACTCCTAGCTAGTTTTGCTAGCTAACAATTCCACTCACTCATAACTCCTTAAAGTTTCACAAGAAGTGAAAAAGGAAATTCAATCGTCGTTTTCAAGTTCAGATTTATTTCAAAAGCATGTTAAGAAGCATGTTAGCCTGACAACAGTACCACTCGggtaaaaggggaaaaagaaaacacagttcaCGGATGAAGATATCTCCGTGGAACTATTTAACCACATCTGCGTCTGATTGGGGGTTTAGTGGGAGAGTAACGATCGAGGGTTCGGAGTCAGCTACTGATCGAAAAGGTTTAAAGTTCACCTCGGTGTTCATAGTTGTCTCAGCCACAGCAAACAAACTAATGTTGCTATAGTCTTCAAAACAGCAGCACCCGGGCATGTTCTCCTGTCGTGATCAAtctgaacatgtgtgtgtatatgagtgtgtatgagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgt
>TU109617
acacacacacacacacacacacacacacacacacacacacacagttaaatcAGTGTTTCACTACACATTAGTACATGAACTAGACCTGTGCTCATAATCAGTTATTCAATTTACTACAATAAGAGGCTTCAAAATGTCTTCACTCGCTCTGTACGTCCTCATGAGGTCATCATAACCACAGCTACTGCACTAGCTACTGCACTAGCTACGCGCTAACAGTGAAACCACGTATTATCAGCTAGCGACCAACACGGCGATCGAACAGAGCGCTTGAAAAACTATTTCCCCCATCAgtttctctcccctgtcatacGTTCACACGTTAAAGCCAAACAACTGCATTTTTTCTGAACTGCATCACCAGGCAGCGCACTCTCAGGGGGGAGCGCTATcggccctcttccacatacatgagctcacaagatgcctacgattggctagtgtcgctgtgattgacaggagggCCAATGTTTCCACTCAGAAACCCAGTaactctagttttctaaacatgaatcGTTGTATACGCTGTTGTGGTTTTTACCCAATCACAtgcttttatgtttattatcCAGCTGAAGGAGGTCATCGAGCCAGAAACGAGCTGTAAAGACACAGAAATCTCAAAGTCTGGGCTGatgcatcattttatttaccatttatggtcTGATGAGTGAATTTATCCTGACTAAAGAAAagtttgagggaaaaaaaaaaaacagcatgtttaaAGACGACCAGAGAGAgaaatttgtgtttattctcaACGCATCAAATTCGTAACTGTTCTGTCCAAACTGTTAGCATGAAGCATCATcgaggaaagaaaacaaacacttgCCTTATTTActctgggggggaaaaaaaagtgctatcggccctcttccacatacacaatcTTGACTCCTTATTTATAGCCAGAAACTAATCGTTAATGGTTAGGGAATAAAAGATAACACTTCAGTCACGTTAATCGCTTATCCAGCTCTTTATAAGCACCTAGATTTTAGTGGAACACCACTGATACAGAGATCGGAGTAAGTTTAAAGGagaggaaaataatttaaaaaataaataaatcagtgtgtacACAAAGAAAAGTCTCTTATTTTGGACAAATataaagaagaacatattgtgTGTTGAGGATCATTAGCACACCTCTGTTAActccttttctccttcctcctcttcaCTCTCCTCTATGAAGCGTCTCTTTGGGCTGGAAACACTGGGCGAGTCGTTTACGGCAGCATCTGAGGTCTTGTTCTCAtcctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtgcatGCAGTGTTCCAACACCGCTCTCAACACACCCTCGTCTGCTTCCCCTAACGCACAGCGGAGTGGCCCGGTCTCGCTGCGCAGGTCAAGTAGCTGATTTACGCGCGGTTTTCTTCAGATCAGCTAATCACCTGGCTTGGAAGTCATTCTCGTAGGTGATCCACCTGCATGTGCTTCTATTTTAGCTGGCTAATGCGCTAAGCTAAACAGCTAGCCAGTTTGCTAATTCACAGCGTAGCGAAGGTGCCTCAGCCAAGCGGAAGTGCACGAGGGCGTGTTAGAGACGGGACTGGAACACAACCCCCGCTTAGCCCTAGGGTTAATAATGCGGTACCTACCCCAGCGTGAGGAGGAGGGGGTCTGTGTGCGGGCGTTACGGGAGCGTTCGGGGGGCGTGGCGTAGGGAGGTGTGGCTGTGGGGGTACGGACGGTCGTGGGGGTTGGGGTAAACAGGAACCGGGGGCATGACGGCCGGCTGCTGGCCCCCTGACGCTCGCATCACGTCCTCGGAGATTATTTCTTTGATCCGCA
>TU109618
tggaATGATTGTGATATGATGTAAATCCTTATAGGTAGAAATAGAAATGAgtgaataaaagacaaaaacaggtTTCAAGGTTGTGATTTTATTCCATAGGAACAGTTATTTTCCAAACTCAGAAAAGTTCAGCTCAAGGAAGGACTCGAGGGGGTCAGGGGCACATCTTCTCCTGCTAGAGGGTTGGGGTAGGTCGGGGAATAATGTGGTGTGAATGTGGCTGGGgagaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtaagcaggaGCAGTGCAGGCCATGATCTCTGCAGATCGGCCAGTTTCTCCCTGCTGATGTTGATTTAGGAGGTGAGTATCAGCAAGAGCCAAATGATCTTCACTGGCCTCGCCTTCATtaacctccacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtgcatGCAGTGTTCCAACACCGCTCTCAACACACCCTCGTCTGCTTCCCCTAACGCACAGCGGAGTGGCCCGGTCTCGCTGCGCAGGTCAAGTAGCTGATTTACGCGCGGTTTTCTTCAGATCAGCTAATCACCTGGCTTGGAAGTCATTCTCGTAGGTGATCCACCTGCATGTGCTTCTATTTTAGCTGGCTAATGCGCTAAGCTAAACAGCTAGCCAGTTTGCTAATTCACAGCGTAGCGAAGGTGCCTCAGCCAAGCGGAAGTGCACGAGGGCGTGTTAGAGACGGGACTGGAACACAACCCCCGCTTAGCCCTAGGGTTAATAATGCGGTACCTACCCCAGCGTGAGGAGGAGGGGGTCTGTGTGCGGGCGTTACGGGAGCGTTCGGGGGGCGTGGCGTAGGGAGGTGTGGCTGTGGGGGTACGGACGGTCGTGGGGGTTGGGGTAAACAGGAACCGGGGGCATGACGGCCGGCTGCTGGCCCCCTGACGCTCGCATCACGTCCTCGGAGATTATTTCTTTGATCCGCA

Function

NR:

description
PREDICTED: UPF0469 protein KIAA0907-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109602 True 2984 lncRNA 0.44 2 931958 971909
TU109603 False 953 lncRNA 0.45 2 939552 971909
TU109605 False 1020 lncRNA 0.53 2 970248 976549
TU109608 False 965 lncRNA 0.45 2 934794 971909
TU109610 False 989 lncRNA 0.45 2 939552 971909
TU109617 False 1868 lncRNA 0.46 2 970248 975438
TU109618 False 1012 lncRNA 0.53 2 970248 976549

Neighbor

gene id symbol gene type direction distance location
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 232181 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 271404 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 684648 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 708574 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 754314 177113 ~ 177644 (-)
LOC117597537 fsd2 coding upstream 58400 1034949 ~ 1056267 (-)
homer2 homer2,LOC108414443 coding upstream 80156 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 106147 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 127402 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 149082 1125631 ~ 1149797 (-)
G92309 NA non-coding downstream 7839 887007 ~ 924119 (-)
G92321 NA non-coding downstream 17030 911310 ~ 914928 (-)
G92312 NA non-coding downstream 25216 896140 ~ 906742 (-)
G92284 NA non-coding downstream 40672 831382 ~ 891286 (-)
G92285 NA non-coding downstream 44956 865874 ~ 887002 (-)
G92343 NA non-coding upstream 5952 982501 ~ 984521 (-)
G92359 NA non-coding upstream 37898 1014447 ~ 1016182 (-)
G92294 NA non-coding upstream 172990 1149539 ~ 1216437 (-)
G92412 NA non-coding upstream 312152 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 360342 1336891 ~ 1341381 (-)
slc27a2a LOC108264486 other downstream 85023 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 129746 782910 ~ 802212 (-)
G92240 NA other downstream 184428 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 608018 266207 ~ 323940 (-)
LOC113534658 NA other downstream 786997 143425 ~ 144961 (-)
G92340 NA other upstream 5518 982067 ~ 989056 (-)
bloc1s6 bloc1s6 other upstream 220586 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 246172 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 539189 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 635262 1611811 ~ 1648286 (-)

Expression


Co-expression Network