G92284


Basic Information

Item Value
gene id G92284
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 831382 ~ 891286 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109626
CGTAAACACAATGGGAAATACCGAGGTCAGCAAAAATGGTCATGGTTCTATATATCGTACGATAAGTCGATAACGTAATTAAATtaaacgaaaaacaaaaaatttgttGGTTGCACAAGTATTCAACCTTGTAGCTCAACACCTGGTAGAACCTCCATGACTGCAGTTCCAGCTGCAGGTCTTCTGGGATGCGTATCTGTcggctttgcacatctggatcttCAGATTTTAGTCAATTTGGCAAAATTGCTCCGTTATGTCAGATTAGATGGAGACCGTTGCTGAACAGCAGCTTTCAAGTCTTGCTACAGATTCACAGTTGGATTGTGGTCTGGGATTTGACTGGGTGGTTCTGATCCATTCAGGTTCTTGGTGTTGAACCACTTCAGTATAGCTTTGGTCTGTTTTCTTCTTGattttctctccatcttgcCTTCAACCCAGGTCAGTTTCTCAATCCCTGCTAATGAAAAGCAttcccacaacatgatgctaccaccaccgtgtTTCACAGTAGGAACGGTGtgctcagggtgatgagcagtgttgagTTTCTGCCAAACATACCATTTTGTGCTGAGGCCaaactgttcagttttggttccatcagaccagagaaccatTTTCCACGTTTGCCGAGTCTCCGATGTCCCTTTCGTCAAACTCCATTTCGTATGACTTTTGTGATTGTCCTGTAAACATCTCCCATCTGCGCTGTCGATCTCTGCAGCTCCTTTAGGCTTCTCCTTGTCCTCTTGGTTGTGTCTCTGACTAATTCCCTCTTTCCCTGCTAACTGACTGTAAGGGGAAGGTCTCTTCTAGAAAGAGTCGTGTTTATATcgtattatttatattttttaataatttatttaataacaatatgtggggtgttcaaagtttgggataatttttttataaccaaacagCGAGTGATACTTTTCCAGAGCTTTGacctggacttgttttgattggtccttggtcttcatgatggtGTGTATTCTATGTTCAttaacaaactctgggttcttccaggaacaggtgtatttatcctgaggtcatgtgacactttaaatGCCAACCTGCAAACTCCAATCAattaattatgtgacttctgatggcagcTGGTTTGAGCAGAACTGATttagggggtgaatatttacgCATTTCATTTCAGACGGTTCATACTGGGAACCTCACTAAGATGTAGAAGACTAAACCCACTGAAAATGTGTGTCATGTTGATCAGTCCAATGATTTTCACGATACTTACcaagattttcaaacattttttgaaTGGTAGTCTCGTTGGCGTCCACCATGACGCGTTTCTCATCCAGCATCAGGACATTCATGGACAACCACTTGGAGGACATCCAGAGCGGGTGATCTATGACGAATCAAATCGTTACATTATACAGTTATGACATTATACAGTTACCTGAAGTTTTAAATGATGCGTCTGTCTAATTTTTGTTTgtgagatttattatttttaatgtaaacaggAATTTTATTCTCAGACTTTCAGACTTGAAGATATTAACACAGTTTATTAACTTTCACCGCTGTGTGAACATGAAACTCACCATCAGGAATTAAAGGTGTTGGTGGATGCACCACCGTCCAGCCGGCTTTCTTAAACATCTCAATCTGCACAGGGACACAAGACATCAGTCATTAATGGTAACTGTAGAGCAtctccatcacatcatcacgGTTTGCTATTGGTTCAGTTCCTAGCGCTTCTCATTTATGGGGCTTTCTGCTGTTGAATTTCCTTCGTTCCTCCAATTTCCATTTTCCTGCCTTTCTCAGTTTCCTAGTACCTGGTTTTTCTAGTTTCTGGTATTTTCTCAGTTTGATCTTCCTTGATTCCTGCGTTCCAGTTCCTTTATTCTTAATTTCCCCTTTTTCCGAGTTTGTAGTTTTCTTTGTTCTTAGTCTTCACGTTTGTGGTGTGGAGGTTTTTATTTCCCTCGTCTCTAGCATTCTTGTTTCCCTGTTCCCAACTTCCCtgcctttaatttaaaaaaaaaaaaaaaaaaaaaaacaatttttttttgaccttTTCTAAGATTCCACTTGCTTGTGTTTTAATCTTCTTGCCCTGTAGAAAAAACATCACCTTTCTAACATCTAAGCGTAGATCTTAGCCTTCTTTTGAAAAAGGAGCTTCTTCTTTATCTTGCCTCAGGATAGGCTACATATGTTTAAAAACCAGCACTGGTTCTAGTCAAGCTAGTAGGCAAGTACCTAGCATATTAGCTCAGTGAAATCAAAGAGGGTGTGGCACTCACCTGACGACATGGTCTGTCTGGATTGGACAGAACCAGTCCAGGTCCGATGATGTTAAAGGTGGCGTCAATGTGCATCGGGTTCGGATCCTTAAAGGAGATGATGTGCACCTTGTAGGTGGGAGCGAGGTGACGCCTCATCCACTCGATTCCCATAAAGTTAGTCACCTGTGAGCAGATGTGAACATTATTAGATCTTTATAGTCTGTTCTGTGAGAGATTAgaactttaaatataaataaaaactatacaGTTTGGAGACGTTATTAAGTAGTGAACACTACAGCGTACTTTCTTGTGGAGATTCACTGGGTTCGACATGAAGCCACATGGTTTCCACAAACATGACAGTAAAATAATTGTGGAGAAAACAGACGTCATGTGGAGACTTGGTGTGATTATAGCAGCTGGCGAAACATGCTACGTGATCAAGCTACAAATGAGGCATGCTCAAGCCAGTTCATTCCAAGATGGCTGACTTTGTAGAAATTACTTCTTCCTGTAGTTGTGGAAATTGTCACAACAAAAGATTTTAACAGCGCCACCTGCAGTGCTGGAGTCTGAGGTGGTCTCATCATCGCGTAACCTTCACAGACATCATCTCCACATGAAGTACGCAGAGGTGTTCAGAAGATTAATGACGCTAACActcaaaacaacacacacacacacacacacactcacacttcttcatgtgtgtgtatttgtcacCTGGCTCCGCTGTACAAACAGATCTGTTCCGGCTCGGATGAAATCAGCAGCGTCAAAACATGGCTCATGTTCAGTGGTGACAAACTTCCCCTCTGCAGCTAGCTTGTGTCTGTCCTCTACTGTACGGATCGGgtaatcctacacacacacacacacacacacactttcattacTACACAGGGAGTGTGAATTATAACAGTCGAGTGTGCAAGAGGAGAGTTAGCGCTATTAAATCATGCTACTGCCTGGTTGTTTCCTGATGCTCCACTCTGACTCCGCCCCCAATCCCCAAGAGCGCATAGGAGCAAGGTACGTTTCACATAAAGCTCTAGACagcaatatgcaaattatatgcaaattatataCAAAACTGACTTTCTGCGctcttcttttcattttttctatttttttatactaatgttactgtttttaatttaaacagatggatttttttttgggctGAAACTTCACACCTTAAGTGGATCTAATTTAAATCTGATATAAATATGTCTTTATTTACAGCTCCATGTTTACATGAATAATTCATACTCAAATGTAACCACCAGGTAGAAACAGACTGATTTATGAAACGAgagagactttaaaaaaaaaaaaaaaaaaaaaagaagtgtgtaagagagatggaaaaagagGGAGGGGTGATAAGCGAGAATGaccttcatttaaaacaaacacatttgtcCTGAATAGAAACCTGAACACGCTGgaatacacactaacacacttcaGAAAGTTTAAGAGGAAATAATaatctctcactctctacaGATACGCTCACTAACTCGCTAAAACACTAGCATGCTAACTGCCTGAAATGTTAAGTATATGATATGAGGATGTGATGTTGGGGCGTGGCGTGATGTCATTTTGGCGTGAACATCACGGATCAGCTACCAAACTAGCTGTGATTCTTGTAACTATAACAATCAACATTAAGAAGAtaatggaatttttaaaaaatggaccaGGAGTACTTAACCAAGGTAAGTGGATGATGTGTTCAAGTTACCACTGGAAcaaggtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacctgatCGTATAGCTCATCTGCCATGGTGGGTTTGGGTGCGGTGGTCCACTTTGCTCCTTGTTTAAAGTATTCTTTAATAAGCGGCCTGTAAGCACGATACTCGAAAAACCGAGCTCTCCACGCCATCGGAGCCTCGATGATCTCGTTCCCCACCACCAATAGGATGTCTCGCGGCATGGCTGCAtacatacctacacacacacacacacacacacacacacacacacacacacagag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109626 True 4343 lncRNA 0.41 3 831382 891286

Neighbor

gene id symbol gene type direction distance location
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 131605 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 170828 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 584072 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 607998 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 653738 177113 ~ 177644 (-)
LOC117597537 fsd2 coding upstream 143663 1034949 ~ 1056267 (-)
homer2 homer2,LOC108414443 coding upstream 165419 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 191410 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 212665 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 234345 1125631 ~ 1149797 (-)
G92239 NA non-coding downstream 57825 745527 ~ 773557 (-)
G92236 NA non-coding downstream 98617 731115 ~ 732765 (-)
G92247 NA non-coding downstream 115885 714820 ~ 715497 (-)
G92220 NA non-coding downstream 225306 604050 ~ 606076 (-)
LOC117597554 NA non-coding downstream 340586 489562 ~ 490796 (-)
G92312 NA non-coding upstream 4854 896140 ~ 906742 (-)
G92321 NA non-coding upstream 20024 911310 ~ 914928 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding upstream 40672 931958 ~ 976549 (-)
G92338 NA non-coding upstream 71203 962489 ~ 963210 (-)
G92343 NA non-coding upstream 91215 982501 ~ 984521 (-)
usp8 LOC107665382,LOC107595392 other downstream 29170 782910 ~ 802212 (-)
G92240 NA other downstream 83852 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 507442 266207 ~ 323940 (-)
LOC113534658 NA other downstream 686421 143425 ~ 144961 (-)
G92340 NA other upstream 90781 982067 ~ 989056 (-)
bloc1s6 bloc1s6 other upstream 305849 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 331435 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 624452 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 720525 1611811 ~ 1648286 (-)

Expression


Co-expression Network