G92338


Basic Information

Item Value
gene id G92338
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 962489 ~ 963210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109703
TGAGAGAAAACTCCTTTATATTCTGCATTTCAGAATAAAATTTTGCTTTACACCTTTAACATGTCACACAGATCCACGTGGCtacttcttcatcatcatcatcatcatcatgatcatcatcatcgtcgtgaCCCATCACCATCCTCGTCTTCCTCCTCGGCTGCTGCTCgtgtttttttccagtgtaaAATTCAGAGTCTATACAAAAATATGGAGCTTTACTCAGCGTTCTGTTACAGCGGTGTGTTATTACAAACGTGTCCGGATGTCCActgcagtgagacagGTGTCCGCCGCAGTGAGACAGTGGGCTGTGCTGTATAAATAGCGTATAAAATAAGGCAGTCTCTTCAGTAGGATAAACCGGATACAAAAACCCTCGccgggaaaaaaaatcattcaagtCCAAAACACGGTTCACGTTTCACAGATTCTCGCCATGCTGCAACACTCTGCCTTCCCATGAGGCtctgaagacacacacatacacacacacacacacacacacacacactccatccgTCGTTCACATCTGATTAGGCATGCGCCGATATGAAACTCGTATCATTATAACCgcttaaacatttaatcatGGTATACGATAAAATCACGATACCATATTGGGACGACAACACTATGTCTGCCATGTTCTTCAAACATAAAGacaaaggaaagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109703 True 680 lncRNA 0.43 2 962489 963210

Neighbor

gene id symbol gene type direction distance location
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 262712 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 301935 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 715179 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 739105 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 784845 177113 ~ 177644 (-)
LOC117597537 fsd2 coding upstream 71739 1034949 ~ 1056267 (-)
homer2 homer2,LOC108414443 coding upstream 93495 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 119486 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 140741 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 162421 1125631 ~ 1149797 (-)
G92309 NA non-coding downstream 38370 887007 ~ 924119 (-)
G92321 NA non-coding downstream 47561 911310 ~ 914928 (-)
G92312 NA non-coding downstream 55747 896140 ~ 906742 (-)
G92284 NA non-coding downstream 71203 831382 ~ 891286 (-)
G92285 NA non-coding downstream 75487 865874 ~ 887002 (-)
G92343 NA non-coding upstream 19291 982501 ~ 984521 (-)
G92359 NA non-coding upstream 51237 1014447 ~ 1016182 (-)
G92294 NA non-coding upstream 186329 1149539 ~ 1216437 (-)
G92412 NA non-coding upstream 325491 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 373681 1336891 ~ 1341381 (-)
slc27a2a LOC108264486 other downstream 115554 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 160277 782910 ~ 802212 (-)
G92240 NA other downstream 214959 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 638549 266207 ~ 323940 (-)
LOC113534658 NA other downstream 817528 143425 ~ 144961 (-)
G92340 NA other upstream 18857 982067 ~ 989056 (-)
bloc1s6 bloc1s6 other upstream 233925 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 259511 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 552528 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 648601 1611811 ~ 1648286 (-)

Expression


Co-expression Network