G92340


Basic Information

Item Value
gene id G92340
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 982067 ~ 989056 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU109707
gacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgaatCAATGACACTGAACTGATAGAACGACGCTGAACGGAGAGAACGATACTGAGCTGATAGACTGACACTGAACTGAGAGAACAACGCTGAACTGAAACAACAACACTGAGCTGAGAGAATGACGATGAACTGACAGAACAACACTGAACTGATAGACTGACGCTGAACTGAAACAAAGACACTGAGCTGAGAGAAGGAAGCTGAACTGATAGACTGACACTGAGCTAAATCAACAACGCTGAGCTGAGAGAACGactctgagctgaaacaacacTGAGCTGAGAGAACGATGCTGAACTGAGAGAACGACACTGAACTGAGAGAACGACACTGAGCTGATAGAACGACGCTGAACTGAGAGAATGGCGATGAACTGAGAGAAAGAAGCTGAACTGATAGACTGAtactgagctgaaacaacgacaCTGAGCTGAGAAAATGACGCTGAACTGAATCAACAACACTGAGCTGACAGAACAAAACTGAACTGAGAGAATGACAGTGAACTGATTGAACGAAGCTGAACTGATACACTGACGTTGAGCTGAGAGAACGAAGCTTAACTGAAACAACAACACTGAGCTGATACACTGACACCGAGTTAAAACAACGACTCTGAACTGAGAGAATGAAGCTGAACTGAGAGAATGACGATGCACTGATAGACTGACACTGAGCTGATACACTGACGTTGAGCTGAGAGAACGAAGCTTAACTGAAACAACAACACTGAGCTGATAGAATGATAATGAACTGATAGACTGACGCTGAGCTGAAATGACGACGCTGAACTGATAGACTGACGATGAACTGATTGAACGAAGCTGAACTGATACACTGACAGAACAGTGTCGTTCTCTCACTTCTCTCACTTTTGTCAGCTCAGTGTTGTTCTCTCAGCTCAGTGTCGTTGATTCAGTtcagcgtcgttCTGTCAGTACAGTGTCGTTCTCTAAGTTCACTGTCGTTCTCTAAGTCCAGTGTCGTTCTCTAAGTTCAGTGTCGTTTCAGCTCAGTGTCCTTCTCTCAGTTCAGCGTTGTTCTATTAGCTCAGTATTGTTGTATTAGGTCAATGATGTTGTGGATGTGAAGTGTCAACAACATGGAACTCAAAACTTACCGTTTGGCCTCACATAAGATACTGTATGAGTTTAGGTCAAATGATGtaacattaatttacatttaagttTGCTCAATTTGTAAGATAATATTTGGGTAAAAGGGTATAagtgctcacatcaaacatcaaatgGTTCACATCAAGAACGCGACCGAGGCAAACACTATTGATGAGTTACATGTGGACCAGAATGACTTACAGGTTCTTTGTTACGGGTTACGCATGGAGAGAAAGAAGTCGTTGGTTCATTGCCACGGCTTACGCATGGAGAGAAAGAAGTCGTTGGTTCATTGCGATGGCCTATGCATGGAGTGGAAGACTTCACAGCCTCGCTGCTTCGACGCACAGGTGGAGTGGAAGACTTCACAGCCTCGCTGCTTCGACGCACAGGTGGAGTGGAAGACTTCACAGCCTCGCTGCATCGACGCACAGGTGGAGTGGAAGACTTCACAGCCTCATCGAGTCGATGATGATATATGACGACCCTGAACTGAAACAACAACACTGAACTGATACGACACCGAGCTGATACAACGATCATTAACATTGGCACAACAATACGGAACTGATACAACGACACTGAACTGATACAACAACACAGAACTTAGAGAATGACgttgagctgaaacaacgacgctgagctgagaGAAAGAAGCTGAACTGATAGACTGAcactgagctgacagaacgacattgagctgacacaacgacgctgagctgacacaacgacgctgagctgacacaacgacgctgagctgacacaacgacgctgagctgaaacaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgaaacaacgacgttgagctgaaacaacgacgctgagctgaaacaacgacgttgagctgaaac
>TU109708
gacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgacagaacgacgctgagctgaatCAATGACACTGAACTGATAGAACGACGCTGAACGGAGAGAACGATACTGAGCTGATAGACTGACACTGAACTGAGAGAACAACGCTGAACTGAAACAACAACACTGAGCTGAGAGAATGACGATGAACTGACAGAACAACACTGAACTGATAGACTGACGCTGAACTGAAACAAAGACACTGAGCTGAGAGAAGGAAGCTGAACTGATAGACTGACACTGAGCTAAATCAACAACGCTGAGCTGAGAGAACGactctgagctgaaacaacacTGAGCTGAGAGAACGATGCTGAACTGAGAGAACGACACTGAACTGAGAGAACGACACTGAGCTGATAGAACGACGCTGAACTGAGAGAATGGCGATGAACTGAGAGAAAGAAGCTGAACTGATAGACTGAtactgagctgaaacaacgacaCTGAGCTGAGAAAATGACGCTGAACTGAATCAACAACACTGAGCTGACAGAACAAAACTGAACTGAGAGAATGACAGTGAACTGATTGAACGAAGCTGAACTGATACACTGACGTTGAGCTGAGAGAACGAAGCTTAACTGAAACAACAACACTGAGCTGATACACTGACACCGAGTTAAAACAACGACTCTGAACTGAGAGAATGAAGCTGAACTGAGAGAATGACGATGCACTGATAGACTGACACTGAGCTGATACACTGACGTTGAGCTGAGAGAACGAAGCTTAACTGAAACAACAACACTGAGCTGATAGAATGATAATGAACTGATAGACTGACGCTGAGCTGAAATGACGACGCTGAACTGATAGACTGACGATGAACTGATTGAACGAAGCTGAACTGATACACTGACAGAACAGTGTCGTTCTCTCACTTCTCTCACTTTTGTCAGCTCAGTGTTGTTCTCTCAGCTCAGTGTCGTTGATTCAGTtcagcgtcgttCTGTCAGTACAGTGTCGTTCTCTAAGTTCACTGTCGTTCTCTAAGTCCAGTGTCGTTCTCTAAGTTCAGTGTCGTTTCAGCTCAGTGTCCTTCTCTCAGTTCAGCGTTGTTCTATTAGCTCAGTATTGTTGTATTAGGTCAATGATGTTGTGGATGTGAAGTGTCAACAACATGGAACTCAAAACTTACCGTTTGGCCTCACATAAGATACTGTATGAGTTTAGGTCAAATGATGtaacattaatttacatttaagttTGCTCAATTTGTAAGATAATATTTGGGTAAAAGGGTATAagtgctcacatcaaacatcaaatgGTTCACATCAAGAACGCGACCGAGGCAAACACTATTGATGAGTTACATGTGGACCAGAATGACTTACAGGTTCTTTGTTACGGGTTACGCATGGAGAGAAAGAAGTCGTTGGTTCATTGCCACGGCTTACGCATGGAGAGAAAGAAGTCGTTGGTTCATTGCGATGGCCTATGCATGGAGTGGAAGACTTCACAGCCTCGCTGCTTCGACGCACAGGTGGAGTGGAAGACTTCACAGCCTCGCTGCTTCGACGCACAGGTGGAGTGGAAGACTTCACAGCCTCGCTGCATCGACGCACAGGTGGAGTGGAAGACTTCACAGCCTCATCGAGTCGATGATGATATATGACGACCCTGAACTGAAACAACAACACTGAACTGATACGACACCGAGCTGATACAACGATCATTAACATTGGCACAACAATACGGAACTGATACAACGACACTGAACTGATACAACAACACAGAACTTAGAGAATGACgttgagctgaaacaacgacgctgagctgagaGAAAGAAGCTGAACTGATAGACTGAcactgagctgacagaacgacattgagctgacacaacgacgctgagctgacacaacgacgctgagctgacacaacgacgctgagctgacacaacgactctgagctgaaacaacgacgctgagctgaaacaacgacgctgagctgaaacaacgacgctgagctgaaacaacgactctgagctgaaacaacgactctgagctgacagaacgacgctgagctgaaacaacgacgctgagctgaaacaaagACACTGAACTGAGAGAACAAAGCACAGGTGAAGTGGAAGATTCACAGCCTCGTTGCATCGACACGCAGGTCTGAGGAAGCTTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109707 False 2226 TUCP 0.47 5 983467 989056
TU109708 True 2334 TUCP 0.47 5 982067 989056

Neighbor

gene id symbol gene type direction distance location
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 282290 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 321513 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 734757 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 758683 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 804423 177113 ~ 177644 (-)
LOC117597537 fsd2 coding upstream 45893 1034949 ~ 1056267 (-)
homer2 homer2,LOC108414443 coding upstream 67649 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 93640 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 114895 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 136575 1125631 ~ 1149797 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 5518 931958 ~ 976549 (-)
G92338 NA non-coding downstream 18857 962489 ~ 963210 (-)
G92309 NA non-coding downstream 57948 887007 ~ 924119 (-)
G92321 NA non-coding downstream 67139 911310 ~ 914928 (-)
G92312 NA non-coding downstream 75325 896140 ~ 906742 (-)
G92359 NA non-coding upstream 25391 1014447 ~ 1016182 (-)
G92294 NA non-coding upstream 160483 1149539 ~ 1216437 (-)
G92412 NA non-coding upstream 299645 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 347835 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 355494 1344550 ~ 1344828 (-)
slc27a2a LOC108264486 other downstream 135132 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 179855 782910 ~ 802212 (-)
G92240 NA other downstream 234537 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 658127 266207 ~ 323940 (-)
LOC113534658 NA other downstream 837106 143425 ~ 144961 (-)
bloc1s6 bloc1s6 other upstream 208079 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 233665 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 526682 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 622755 1611811 ~ 1648286 (-)
G92531 NA other upstream 779349 1768405 ~ 1768795 (-)

Expression


Co-expression Network